Variant report

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs10160737	0.85[AMR][1000 genomes];0.90[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10458876	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10832529	0.89[CEU][hapmap]
rs10832532	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10832533	0.85[AMR][1000 genomes];0.94[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10832536	0.81[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs11023773	0.88[CEU][hapmap]
rs11023779	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11023783	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11023787	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11023789	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11023790	0.85[AMR][1000 genomes];0.88[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs11023791	0.87[ASN][1000 genomes]
rs11023792	0.81[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs11023794	0.81[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs11023795	0.85[ASN][1000 genomes]
rs11023798	0.81[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs12226315	0.85[ASN][1000 genomes]
rs12276616	0.90[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs12280756	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12293688	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7111730	0.88[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs965631	0.82[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832073	chr11:15822409-15984078	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Strong transcription ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv832074	chr11:15927105-16100772	Enhancers Weak transcription ZNF genes & repeats Bivalent Enhancer Strong transcription Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	6 gene(s)	inside rSNPs	diseases
3	nsv818799	chr11:15930472-15946803	Enhancers Weak transcription Bivalent Enhancer ZNF genes & repeats Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
4	nsv522229	chr11:15941099-15946803	Weak transcription Enhancers Bivalent Enhancer	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:15940200-15943400	Enhancers	Fetal Heart	heart
2	chr11:15940800-15945400	Enhancers	Cortex derived primary cultured neurospheres	brain
3	chr11:15941000-15945000	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
4	chr11:15941200-15943000	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
5	chr11:15941800-15942800	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
6	chr11:15941800-15943400	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
7	chr11:15941800-15943600	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
8	chr11:15942000-15942200	Enhancers	Fetal Intestine Large	intestine
9	chr11:15942000-15942800	Enhancers	Brain Germinal Matrix	brain
10	chr11:15942000-15942800	Enhancers	Left Ventricle	heart
11	chr11:15942000-15942800	Enhancers	Right Atrium	heart
12	chr11:15942000-15943400	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin

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