Variant report

Variant	rs8022447
Chromosome Location	chr14:64959312-64959313
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	EP300	chr14:64959250-64960418	SK-N-SH	brain:	n/a	n/a
2	MXI1	chr14:64959186-64960988	SK-N-SH	brain:	n/a	n/a

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr14:64958246..64960870-chr14:64967867..64972086,4	K562	blood:
2	chr14:64957408..64961833-chr14:64968982..64972745,8	MCF-7	breast:

Variant related genes	Relation type
ZBTB25	TF binding region
ENSG00000089775	Chromatin interaction
ENSG00000126804	Chromatin interaction

Extended variants
information (count: 44 )
Associated
traits (count: 2 )

rSNPs within LD-proxies of this variant (count:44)

rs_ID	r²[population]
rs10138919	0.84[EUR][1000 genomes]
rs1040612	0.88[CEU][hapmap];0.84[TSI][hapmap];0.84[EUR][1000 genomes]
rs10431708	0.95[AFR][1000 genomes];0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10498515	0.88[CEU][hapmap]
rs1063391	0.85[CHB][hapmap];0.81[CHD][hapmap]
rs11158546	0.82[EUR][1000 genomes]
rs12432891	0.85[CHB][hapmap];0.81[CHD][hapmap]
rs1256146	0.82[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];0.92[CHD][hapmap];1.00[GIH][hapmap];0.89[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.94[YRI][hapmap];0.82[AFR][1000 genomes];0.86[AMR][1000 genomes];0.94[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs1256148	1.00[CHB][hapmap];0.93[CHD][hapmap];0.87[GIH][hapmap];0.85[MEX][hapmap];0.90[TSI][hapmap];0.86[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs1256150	0.91[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12589322	0.88[CEU][hapmap]
rs12886478	0.86[AFR][1000 genomes]
rs12894050	0.83[EUR][1000 genomes]
rs12894807	0.83[CEU][hapmap];0.82[EUR][1000 genomes]
rs1453005	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1901737	0.87[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs2038270	0.88[CEU][hapmap];0.89[TSI][hapmap];0.84[EUR][1000 genomes]
rs2045022	0.85[CHB][hapmap];0.81[CHD][hapmap]
rs2218994	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.96[LWK][hapmap];1.00[MEX][hapmap];0.98[MKK][hapmap];0.94[YRI][hapmap];0.89[AFR][1000 genomes];0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2602156	0.83[AFR][1000 genomes]
rs34616731	0.93[AFR][1000 genomes];0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs35872489	0.82[AFR][1000 genomes];0.86[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs4313734	0.85[CHB][hapmap];0.81[CHD][hapmap]
rs4902287	0.90[AMR][1000 genomes]
rs4902288	0.84[AFR][1000 genomes];0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4902295	0.88[CEU][hapmap];0.86[TSI][hapmap];0.85[EUR][1000 genomes]
rs4902296	0.85[EUR][1000 genomes]
rs4902297	0.88[CEU][hapmap];0.84[TSI][hapmap];0.85[EUR][1000 genomes]
rs4902298	0.85[EUR][1000 genomes]
rs7145155	0.85[CHB][hapmap]
rs7148289	0.88[CEU][hapmap];0.83[TSI][hapmap];0.85[EUR][1000 genomes]
rs7149152	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.89[LWK][hapmap];0.92[MEX][hapmap];0.94[MKK][hapmap];1.00[TSI][hapmap];0.94[YRI][hapmap];0.90[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs7151628	0.85[CHB][hapmap]
rs7156953	1.00[CEU][hapmap];1.00[JPT][hapmap];0.94[MKK][hapmap];0.97[TSI][hapmap];1.00[YRI][hapmap];0.90[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs7159809	0.88[CEU][hapmap]
rs761547	0.88[CEU][hapmap];0.84[EUR][1000 genomes]
rs8007313	0.84[MEX][hapmap]
rs8011038	0.85[CHB][hapmap]
rs8016170	0.85[EUR][1000 genomes]
rs8016361	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[GIH][hapmap];0.89[MKK][hapmap];1.00[TSI][hapmap];0.94[YRI][hapmap];0.90[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs8017407	0.88[CEU][hapmap];0.89[TSI][hapmap];0.83[EUR][1000 genomes]
rs8018169	0.85[EUR][1000 genomes]
rs926802	0.88[CEU][hapmap]
rs9671381	0.87[CEU][hapmap]

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs8022447	ZNF396	trans	cerebellum	SCAN
rs8022447	PLEKHG3	cis	multi-tissue	Pritchard

Chromatin state (count:121 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:64933200-64968400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
2	chr14:64933400-64968200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
3	chr14:64936800-64968400	Weak transcription	Fetal Brain Male	brain
4	chr14:64950000-64968200	Weak transcription	Colonic Mucosa	Colon
5	chr14:64950400-64963000	Strong transcription	Fetal Thymus	thymus
6	chr14:64950600-64967800	Weak transcription	HUVEC	blood vessel
7	chr14:64952200-64968000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
8	chr14:64953000-64960200	Weak transcription	K562	blood
9	chr14:64953200-64968200	Weak transcription	Placenta Amnion	Placenta Amnion
10	chr14:64953600-64959600	Strong transcription	Primary T cells from cord blood	blood
11	chr14:64953600-64959800	Strong transcription	GM12878-XiMat	blood
12	chr14:64954600-64962000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
13	chr14:64954600-64966600	Weak transcription	HepG2	liver
14	chr14:64954600-64968000	Weak transcription	Rectal Smooth Muscle	rectum
15	chr14:64954600-64968200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
16	chr14:64954600-64968400	Weak transcription	Esophagus	oesophagus
17	chr14:64954600-64968400	Weak transcription	Gastric	stomach
18	chr14:64954600-64968400	Weak transcription	Pancreas	Pancrea
19	chr14:64954800-64960600	Weak transcription	Ovary	ovary
20	chr14:64954800-64962000	Weak transcription	Aorta	Aorta
21	chr14:64954800-64966200	Weak transcription	Small Intestine	intestine
22	chr14:64954800-64966400	Weak transcription	Muscle Satellite Cultured Cells	--
23	chr14:64954800-64966400	Weak transcription	Pancreatic Islets	Pancreatic Islet
24	chr14:64954800-64968200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
25	chr14:64954800-64968200	Weak transcription	HSMMtube	muscle
26	chr14:64954800-64968400	Weak transcription	H1 Cell Line	embryonic stem cell
27	chr14:64954800-64968400	Weak transcription	H9 Cell Line	embryonic stem cell
28	chr14:64954800-64968400	Weak transcription	Sigmoid Colon	Sigmoid Colon
29	chr14:64954800-64968400	Weak transcription	Spleen	Spleen
30	chr14:64954800-64969600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
31	chr14:64955000-64961800	Weak transcription	Brain Angular Gyrus	brain
32	chr14:64955000-64968000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
33	chr14:64955000-64968200	Weak transcription	Brain Substantia Nigra	brain
34	chr14:64955200-64959600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
35	chr14:64955200-64961800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
36	chr14:64955200-64963600	Weak transcription	NH-A	brain
37	chr14:64955200-64964600	Weak transcription	A549	lung
38	chr14:64955200-64967800	Weak transcription	NHDF-Ad	bronchial
39	chr14:64955200-64968000	Weak transcription	Brain Hippocampus Middle	brain
40	chr14:64955200-64968000	Weak transcription	Duodenum Smooth Muscle	Duodenum
41	chr14:64955200-64968200	Weak transcription	Right Ventricle	heart
42	chr14:64955400-64959400	Weak transcription	Primary T killer memory cells from peripheral blood	blood
43	chr14:64955400-64961800	Weak transcription	Colon Smooth Muscle	Colon
44	chr14:64955400-64966600	Weak transcription	Duodenum Mucosa	Duodenum
45	chr14:64955400-64967800	Weak transcription	Rectal Mucosa Donor 29	rectum
46	chr14:64955400-64967800	Weak transcription	Rectal Mucosa Donor 31	rectum
47	chr14:64955400-64968200	Weak transcription	Fetal Kidney	kidney
48	chr14:64955600-64960400	Weak transcription	Brain Anterior Caudate	brain
49	chr14:64955600-64961800	Weak transcription	Osteobl	bone
50	chr14:64955600-64968200	Weak transcription	Placenta	Placenta

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