Variant report

Variant	rs761547
Chromosome Location	chr14:65096985-65096986
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr14:65002278..65004698-chr14:65096604..65098863,2	MCF-7	breast:
2	chr14:65005880..65009411-chr14:65095614..65097632,3	MCF-7	breast:
3	chr14:64970085..64973527-chr14:65095714..65099438,6	MCF-7	breast:
4	chr14:65096029..65097733-chr14:65101219..65102871,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000126804	Chromatin interaction
ENSG00000126803	Chromatin interaction
ENSG00000259116	Chromatin interaction
ENSG00000089775	Chromatin interaction
ENSG00000259160	Chromatin interaction

Extended variants
information (count: 41 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:40)

rs_ID	r²[population]
rs10138919	0.86[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs1040612	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[YRI][hapmap];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10431708	0.84[EUR][1000 genomes]
rs10498515	1.00[CEU][hapmap];0.84[CHB][hapmap];0.92[JPT][hapmap];0.90[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10873175	0.88[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs11158546	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1256146	0.88[CEU][hapmap];0.82[EUR][1000 genomes]
rs1256150	0.85[EUR][1000 genomes]
rs12589307	0.93[JPT][hapmap];0.83[ASN][1000 genomes]
rs12589322	1.00[CEU][hapmap];0.85[CHB][hapmap];0.93[JPT][hapmap];0.90[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12894050	0.94[EUR][1000 genomes]
rs12894807	1.00[CEU][hapmap];0.89[AMR][1000 genomes];0.97[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1453005	0.84[EUR][1000 genomes]
rs2038270	1.00[CEU][hapmap];0.84[CHB][hapmap];0.92[JPT][hapmap];0.91[YRI][hapmap];0.86[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs2038273	0.86[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs2092718	0.81[AMR][1000 genomes]
rs2123461	0.92[JPT][hapmap];0.83[ASN][1000 genomes]
rs2218994	0.88[CEU][hapmap];0.84[EUR][1000 genomes]
rs34616731	0.82[EUR][1000 genomes]
rs4902288	0.85[EUR][1000 genomes]
rs4902295	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[YRI][hapmap];0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4902296	0.87[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4902297	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[YRI][hapmap];0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4902298	0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4902299	0.84[CHB][hapmap]
rs7141346	0.82[AMR][1000 genomes];0.84[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7148289	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[YRI][hapmap];0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7149152	0.88[CEU][hapmap];0.86[EUR][1000 genomes]
rs7156953	0.89[CEU][hapmap];0.86[EUR][1000 genomes]
rs7159809	1.00[CEU][hapmap];0.85[CHB][hapmap];0.93[JPT][hapmap];0.83[EUR][1000 genomes]
rs8003734	0.89[AMR][1000 genomes];0.90[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs8007313	0.91[YRI][hapmap]
rs8016170	0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs8016361	0.88[CEU][hapmap];0.86[EUR][1000 genomes]
rs8017407	1.00[CEU][hapmap];0.84[CHB][hapmap];0.92[JPT][hapmap];0.86[AMR][1000 genomes];0.94[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs8018169	0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs8022447	0.88[CEU][hapmap];0.84[EUR][1000 genomes]
rs926802	1.00[CEU][hapmap];0.84[CHB][hapmap];0.92[JPT][hapmap];0.89[AMR][1000 genomes];0.90[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9671381	1.00[CEU][hapmap];0.85[CHB][hapmap];0.93[JPT][hapmap];0.90[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs971736	0.84[CHB][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1049097	chr14:65027753-65202018	Weak transcription Strong transcription Enhancers Genic enhancers Transcr. at gene 5' and 3' Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:45 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:65092600-65099000	Weak transcription	Spleen	Spleen
2	chr14:65092600-65103000	Weak transcription	Fetal Muscle Leg	muscle
3	chr14:65092800-65097600	Enhancers	Colon Smooth Muscle	Colon
4	chr14:65092800-65099000	Weak transcription	Colonic Mucosa	Colon
5	chr14:65092800-65100000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
6	chr14:65093000-65103000	Weak transcription	Fetal Intestine Small	intestine
7	chr14:65093200-65098200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
8	chr14:65094800-65097600	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
9	chr14:65095400-65097600	Enhancers	Rectal Smooth Muscle	rectum
10	chr14:65095600-65098000	Weak transcription	Fetal Intestine Large	intestine
11	chr14:65095800-65097000	Weak transcription	Duodenum Smooth Muscle	Duodenum
12	chr14:65095800-65097000	Weak transcription	Rectal Mucosa Donor 29	rectum
13	chr14:65095800-65099000	Weak transcription	Placenta	Placenta
14	chr14:65095800-65100000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
15	chr14:65095800-65100000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
16	chr14:65095800-65103000	Weak transcription	Esophagus	oesophagus
17	chr14:65095800-65103000	Weak transcription	Stomach Mucosa	stomach
18	chr14:65096000-65097200	Weak transcription	Rectal Mucosa Donor 31	rectum
19	chr14:65096000-65097200	Weak transcription	HSMM	muscle
20	chr14:65096000-65097400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
21	chr14:65096000-65099000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
22	chr14:65096000-65099000	Weak transcription	Brain Substantia Nigra	brain
23	chr14:65096000-65099000	Weak transcription	Fetal Lung	lung
24	chr14:65096000-65099200	Weak transcription	Hela-S3	cervix
25	chr14:65096000-65100000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
26	chr14:65096000-65100000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
27	chr14:65096000-65101400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
28	chr14:65096000-65103000	Weak transcription	H1 Cell Line	embryonic stem cell
29	chr14:65096000-65103000	Weak transcription	HUES6 Cell Line	embryonic stem cell
30	chr14:65096000-65105600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
31	chr14:65096000-65106200	Weak transcription	HUES48 Cell Line	embryonic stem cell
32	chr14:65096200-65097600	Enhancers	A549	lung
33	chr14:65096200-65099000	Weak transcription	Brain Angular Gyrus	brain
34	chr14:65096200-65099000	Weak transcription	Brain Cingulate Gyrus	brain
35	chr14:65096200-65099000	Weak transcription	Brain Hippocampus Middle	brain
36	chr14:65096200-65099000	Weak transcription	Brain Inferior Temporal Lobe	brain
37	chr14:65096200-65101600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
38	chr14:65096200-65103000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
39	chr14:65096400-65097800	Enhancers	NHLF	lung
40	chr14:65096400-65098600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
41	chr14:65096400-65098800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
42	chr14:65096600-65099000	Weak transcription	Osteobl	bone
43	chr14:65096600-65103200	Weak transcription	NHEK	skin
44	chr14:65096800-65104200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
45	chr14:65096800-65104400	Weak transcription	NHDF-Ad	bronchial

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