Variant report

Variant	rs7141346
Chromosome Location	chr14:65040459-65040460
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr14:64909070..64910820-chr14:65039192..65042111,2	K562	blood:
2	chr14:65035525..65037855-chr14:65039910..65042725,2	MCF-7	breast:

Extended variants
information (count: 25 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs10138919	0.81[AMR][1000 genomes];0.84[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs1040612	0.88[AMR][1000 genomes];0.84[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs10498515	0.80[AMR][1000 genomes];0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10873175	0.92[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11158546	0.82[AMR][1000 genomes];0.83[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs12589307	0.89[ASN][1000 genomes]
rs12589322	0.80[AMR][1000 genomes];0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12894050	0.83[EUR][1000 genomes]
rs12894807	0.87[AMR][1000 genomes];0.87[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2038270	0.81[AMR][1000 genomes];0.84[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs2123461	0.89[ASN][1000 genomes]
rs4902295	0.88[AMR][1000 genomes];0.85[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs4902296	0.88[AMR][1000 genomes];0.85[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs4902297	0.88[AMR][1000 genomes];0.85[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs4902298	0.88[AMR][1000 genomes];0.85[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7148289	0.88[AMR][1000 genomes];0.85[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7159809	0.80[ASN][1000 genomes]
rs761547	0.82[AMR][1000 genomes];0.84[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs8003734	0.87[AFR][1000 genomes];0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs8016170	0.88[AMR][1000 genomes];0.85[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs8017407	0.88[AFR][1000 genomes];0.81[AMR][1000 genomes];0.85[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs8018169	0.88[AMR][1000 genomes];0.85[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs926802	0.88[AFR][1000 genomes];0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9671381	0.80[AMR][1000 genomes];0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1049097	chr14:65027753-65202018	Weak transcription Strong transcription Enhancers Genic enhancers Transcr. at gene 5' and 3' Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:27 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:65021600-65047600	Weak transcription	Pancreas	Pancrea
2	chr14:65036000-65041600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
3	chr14:65036200-65044000	Weak transcription	Fetal Kidney	kidney
4	chr14:65039000-65041400	Enhancers	Cortex derived primary cultured neurospheres	brain
5	chr14:65039000-65041800	Enhancers	H1 Cell Line	embryonic stem cell
6	chr14:65039000-65041800	Enhancers	Brain Substantia Nigra	brain
7	chr14:65039200-65041000	Enhancers	Skeletal Muscle Male	skeletal muscle
8	chr14:65039200-65041600	Enhancers	Fetal Muscle Leg	muscle
9	chr14:65039400-65040800	Enhancers	Skeletal Muscle Female	skeletal muscle
10	chr14:65040200-65040600	Enhancers	iPS-18 Cell Line	embryonic stem cell
11	chr14:65040200-65040600	Enhancers	Brain Inferior Temporal Lobe	brain
12	chr14:65040200-65040800	Weak transcription	Esophagus	oesophagus
13	chr14:65040200-65041000	Enhancers	Brain Angular Gyrus	brain
14	chr14:65040200-65041000	Enhancers	Brain Hippocampus Middle	brain
15	chr14:65040200-65041000	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
16	chr14:65040200-65041200	Weak transcription	Fetal Lung	lung
17	chr14:65040200-65041800	Enhancers	Brain Anterior Caudate	brain
18	chr14:65040200-65041800	Enhancers	Brain Cingulate Gyrus	brain
19	chr14:65040200-65047200	Weak transcription	Psoas Muscle	Psoas
20	chr14:65040200-65047400	Weak transcription	HUES64 Cell Line	embryonic stem cell
21	chr14:65040200-65047800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
22	chr14:65040200-65048000	Weak transcription	H9 Cell Line	embryonic stem cell
23	chr14:65040200-65051200	Weak transcription	Stomach Smooth Muscle	stomach
24	chr14:65040200-65058000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
25	chr14:65040400-65040600	Weak transcription	Colon Smooth Muscle	Colon
26	chr14:65040400-65047200	Weak transcription	Rectal Smooth Muscle	rectum
27	chr14:65040400-65048000	Weak transcription	HUES48 Cell Line	embryonic stem cell

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