Variant report

Variant	rs9671381
Chromosome Location	chr14:65041632-65041633
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr14:64909070..64910820-chr14:65039192..65042111,2	K562	blood:
2	chr14:65035525..65037855-chr14:65039910..65042725,2	MCF-7	breast:

Extended variants
information (count: 35 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:34)

rs_ID	r²[population]
rs10138919	0.90[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1040612	1.00[CEU][hapmap];0.84[CHB][hapmap];0.92[JPT][hapmap];0.83[AMR][1000 genomes];0.90[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10498515	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10873175	0.94[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11158546	0.88[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1256146	0.87[CEU][hapmap]
rs12589307	0.92[CHB][hapmap];1.00[JPT][hapmap];0.91[ASN][1000 genomes]
rs12589322	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12894050	0.89[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs12894807	1.00[CEU][hapmap];1.00[CHB][hapmap];0.84[JPT][hapmap];0.84[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2038270	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2038273	0.82[ASN][1000 genomes]
rs2123461	0.92[CHB][hapmap];1.00[JPT][hapmap];0.85[YRI][hapmap];0.91[ASN][1000 genomes]
rs2218994	0.87[CEU][hapmap]
rs4902295	1.00[CEU][hapmap];0.84[CHB][hapmap];0.92[JPT][hapmap];0.83[AMR][1000 genomes];0.90[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4902296	0.86[CEU][hapmap];1.00[CHB][hapmap];0.92[JPT][hapmap];0.83[AMR][1000 genomes];0.90[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4902297	1.00[CEU][hapmap];0.84[CHB][hapmap];0.92[JPT][hapmap];0.83[AMR][1000 genomes];0.90[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4902298	0.83[AMR][1000 genomes];0.90[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4902299	0.82[CHB][hapmap]
rs7141346	0.80[AMR][1000 genomes];0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7148289	1.00[CEU][hapmap];0.84[CHB][hapmap];0.92[JPT][hapmap];0.83[AMR][1000 genomes];0.90[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7149152	0.87[CEU][hapmap];0.81[EUR][1000 genomes]
rs7156953	0.88[CEU][hapmap];0.81[EUR][1000 genomes]
rs7159809	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[ASN][1000 genomes]
rs761547	1.00[CEU][hapmap];0.85[CHB][hapmap];0.93[JPT][hapmap];0.90[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs8003734	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs8007313	0.90[CHB][hapmap]
rs8016170	0.83[AMR][1000 genomes];0.90[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs8016361	0.87[CEU][hapmap];0.81[EUR][1000 genomes]
rs8017407	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs8018169	0.83[AMR][1000 genomes];0.90[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs8022447	0.87[CEU][hapmap]
rs926802	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs971736	0.82[CHB][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1049097	chr14:65027753-65202018	Weak transcription Strong transcription Enhancers Genic enhancers Transcr. at gene 5' and 3' Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:65021600-65047600	Weak transcription	Pancreas	Pancrea
2	chr14:65036200-65044000	Weak transcription	Fetal Kidney	kidney
3	chr14:65039000-65041800	Enhancers	H1 Cell Line	embryonic stem cell
4	chr14:65039000-65041800	Enhancers	Brain Substantia Nigra	brain
5	chr14:65040200-65041800	Enhancers	Brain Anterior Caudate	brain
6	chr14:65040200-65041800	Enhancers	Brain Cingulate Gyrus	brain
7	chr14:65040200-65047200	Weak transcription	Psoas Muscle	Psoas
8	chr14:65040200-65047400	Weak transcription	HUES64 Cell Line	embryonic stem cell
9	chr14:65040200-65047800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
10	chr14:65040200-65048000	Weak transcription	H9 Cell Line	embryonic stem cell
11	chr14:65040200-65051200	Weak transcription	Stomach Smooth Muscle	stomach
12	chr14:65040200-65058000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
13	chr14:65040400-65047200	Weak transcription	Rectal Smooth Muscle	rectum
14	chr14:65040400-65048000	Weak transcription	HUES48 Cell Line	embryonic stem cell
15	chr14:65040800-65041800	Flanking Active TSS	Skeletal Muscle Female	skeletal muscle
16	chr14:65041200-65045200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
17	chr14:65041600-65041800	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
18	chr14:65041600-65041800	Enhancers	Brain Hippocampus Middle	brain
19	chr14:65041600-65041800	Enhancers	Skeletal Muscle Male	skeletal muscle

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links