Variant report

Variant	rs10873175
Chromosome Location	chr14:65045535-65045536
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr14:65028883..65030664-chr14:65044545..65046516,2	K562	blood:

Extended variants
information (count: 26 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs10138919	0.88[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1040612	0.88[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10498515	0.94[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11158546	0.87[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs12589307	0.92[ASN][1000 genomes]
rs12589322	0.94[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12894050	0.87[EUR][1000 genomes]
rs12894807	0.81[AMR][1000 genomes];0.91[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2038270	0.88[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2038273	0.81[ASN][1000 genomes]
rs2123461	0.92[ASN][1000 genomes]
rs4902295	0.89[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4902296	0.89[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4902297	0.89[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4902298	0.89[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7141346	0.92[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7148289	0.89[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7159809	0.86[ASN][1000 genomes]
rs761547	0.88[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs8003734	0.83[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs8016170	0.89[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs8017407	0.89[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs8018169	0.89[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs926802	0.83[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9671381	0.94[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1049097	chr14:65027753-65202018	Weak transcription Strong transcription Enhancers Genic enhancers Transcr. at gene 5' and 3' Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:65021600-65047600	Weak transcription	Pancreas	Pancrea
2	chr14:65040200-65047200	Weak transcription	Psoas Muscle	Psoas
3	chr14:65040200-65047400	Weak transcription	HUES64 Cell Line	embryonic stem cell
4	chr14:65040200-65047800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
5	chr14:65040200-65048000	Weak transcription	H9 Cell Line	embryonic stem cell
6	chr14:65040200-65051200	Weak transcription	Stomach Smooth Muscle	stomach
7	chr14:65040200-65058000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
8	chr14:65040400-65047200	Weak transcription	Rectal Smooth Muscle	rectum
9	chr14:65040400-65048000	Weak transcription	HUES48 Cell Line	embryonic stem cell
10	chr14:65041800-65047200	Weak transcription	Skeletal Muscle Male	skeletal muscle
11	chr14:65041800-65047400	Weak transcription	Skeletal Muscle Female	skeletal muscle
12	chr14:65041800-65048000	Weak transcription	H1 Cell Line	embryonic stem cell
13	chr14:65044400-65046800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
14	chr14:65044400-65047200	Weak transcription	Fetal Kidney	kidney
15	chr14:65045400-65045800	Weak transcription	iPS-18 Cell Line	embryonic stem cell

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links