Variant report

Variant	rs4902298
Chromosome Location	chr14:65072379-65072380
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr14:65070948..65072993-chr14:65078887..65080718,2	K562	blood:
2	chr14:65016479..65018425-chr14:65070608..65072935,2	MCF-7	breast:
3	chr14:65070348..65072828-chr14:65088281..65092413,3	MCF-7	breast:

Variant related genes	Relation type
ENSG00000165807	Chromatin interaction

Extended variants
information (count: 37 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:36)

rs_ID	r²[population]
rs10138919	0.85[AFR][1000 genomes];0.89[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs1040612	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10431708	0.85[EUR][1000 genomes]
rs10498515	0.83[AMR][1000 genomes];0.90[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10873175	0.89[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs11158546	0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1256146	0.82[EUR][1000 genomes]
rs1256150	0.86[EUR][1000 genomes]
rs12589307	0.83[ASN][1000 genomes]
rs12589322	0.83[AMR][1000 genomes];0.90[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12894050	0.95[EUR][1000 genomes]
rs12894807	0.87[AFR][1000 genomes];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1453005	0.85[EUR][1000 genomes]
rs2038270	0.85[AFR][1000 genomes];0.89[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs2038273	0.80[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs2123461	0.83[ASN][1000 genomes]
rs2218994	0.85[EUR][1000 genomes]
rs34616731	0.83[EUR][1000 genomes]
rs4902288	0.85[EUR][1000 genomes]
rs4902295	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4902296	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4902297	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7141346	0.88[AMR][1000 genomes];0.85[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7148289	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7149152	0.87[EUR][1000 genomes]
rs7156953	0.87[EUR][1000 genomes]
rs7159809	0.81[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs761547	0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8003734	0.95[AMR][1000 genomes];0.90[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs8016170	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs8016361	0.87[EUR][1000 genomes]
rs8017407	0.89[AMR][1000 genomes];0.95[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs8018169	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs8022447	0.85[EUR][1000 genomes]
rs926802	0.95[AMR][1000 genomes];0.90[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9671381	0.83[AMR][1000 genomes];0.90[EUR][1000 genomes];0.92[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1049097	chr14:65027753-65202018	Weak transcription Strong transcription Enhancers Genic enhancers Transcr. at gene 5' and 3' Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:65068600-65078200	Weak transcription	Pancreas	Pancrea
2	chr14:65068800-65072600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
3	chr14:65068800-65072800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
4	chr14:65068800-65072800	Weak transcription	Placenta Amnion	Placenta Amnion
5	chr14:65068800-65079400	Weak transcription	Right Atrium	heart
6	chr14:65069800-65074000	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
7	chr14:65071800-65073200	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
8	chr14:65071800-65073600	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
9	chr14:65072000-65072400	Flanking Active TSS	NHEK	skin

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