Variant report

Variant	rs8016170
Chromosome Location	chr14:65060225-65060226
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr14:65054460..65056543-chr14:65059198..65061285,2	MCF-7	breast:

Extended variants
information (count: 38 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:37)

rs_ID	r²[population]
rs10138919	0.90[AFR][1000 genomes];0.89[AMR][1000 genomes];0.96[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs1040612	0.92[CEU][hapmap];0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10431708	0.85[EUR][1000 genomes]
rs10498515	0.92[CEU][hapmap];0.83[AMR][1000 genomes];0.90[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10873175	0.89[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11158546	0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1256146	0.85[CEU][hapmap];0.82[EUR][1000 genomes]
rs1256150	0.86[EUR][1000 genomes]
rs12589307	0.85[ASN][1000 genomes]
rs12589322	0.93[CEU][hapmap];0.83[AMR][1000 genomes];0.90[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12894050	0.83[AFR][1000 genomes];0.95[EUR][1000 genomes]
rs12894807	1.00[CEU][hapmap];0.97[AFR][1000 genomes];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1453005	0.85[EUR][1000 genomes]
rs2038270	0.92[CEU][hapmap];0.90[AFR][1000 genomes];0.89[AMR][1000 genomes];0.96[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs2038273	0.80[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs2123461	0.85[ASN][1000 genomes]
rs2218994	0.85[CEU][hapmap];0.85[EUR][1000 genomes]
rs34616731	0.83[EUR][1000 genomes]
rs4902288	0.85[EUR][1000 genomes]
rs4902295	0.92[CEU][hapmap];0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4902296	0.84[CEU][hapmap];0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4902297	0.92[CEU][hapmap];0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4902298	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7141346	0.88[AMR][1000 genomes];0.85[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7148289	0.92[CEU][hapmap];0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7149152	0.85[CEU][hapmap];0.87[EUR][1000 genomes]
rs7156953	0.87[CEU][hapmap];0.87[EUR][1000 genomes]
rs7159809	0.93[CEU][hapmap];0.81[AMR][1000 genomes];0.84[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs761547	0.93[CEU][hapmap];0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs8003734	0.95[AMR][1000 genomes];0.90[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs8007313	0.83[AFR][1000 genomes]
rs8016361	0.85[CEU][hapmap];0.87[EUR][1000 genomes]
rs8017407	0.92[CEU][hapmap];0.89[AMR][1000 genomes];0.95[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs8018169	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs8022447	0.85[CEU][hapmap];0.85[EUR][1000 genomes]
rs926802	0.92[CEU][hapmap];0.95[AMR][1000 genomes];0.90[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9671381	0.93[CEU][hapmap];0.83[AMR][1000 genomes];0.90[EUR][1000 genomes];0.94[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1049097	chr14:65027753-65202018	Weak transcription Strong transcription Enhancers Genic enhancers Transcr. at gene 5' and 3' Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:65048800-65068400	Weak transcription	Pancreas	Pancrea
2	chr14:65058800-65062800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung

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