Variant report

Variant	rs12894050
Chromosome Location	chr14:65025269-65025270
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr14:65024435..65026477-chr14:65030670..65033087,2	MCF-7	breast:
2	chr14:65015764..65017819-chr14:65024149..65025723,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000165807	Chromatin interaction

Extended variants
information (count: 35 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:35)

rs_ID	r²[population]
rs10138919	0.93[AFR][1000 genomes];0.90[AMR][1000 genomes];0.99[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1040612	0.94[EUR][1000 genomes]
rs10431708	0.81[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs10498515	0.89[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs10873175	0.87[EUR][1000 genomes]
rs11158546	0.93[EUR][1000 genomes]
rs1256146	0.81[EUR][1000 genomes]
rs1256150	0.84[EUR][1000 genomes]
rs12589322	0.89[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs12894807	0.84[AFR][1000 genomes];0.81[AMR][1000 genomes];0.96[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs1453005	0.83[EUR][1000 genomes]
rs1901737	0.81[EUR][1000 genomes]
rs2038270	0.93[AFR][1000 genomes];0.90[AMR][1000 genomes];0.99[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2218994	0.84[EUR][1000 genomes]
rs34616731	0.81[EUR][1000 genomes]
rs4902288	0.85[EUR][1000 genomes]
rs4902295	0.88[AFR][1000 genomes];0.95[EUR][1000 genomes]
rs4902296	0.80[AFR][1000 genomes];0.95[EUR][1000 genomes]
rs4902297	0.95[EUR][1000 genomes]
rs4902298	0.95[EUR][1000 genomes]
rs7141346	0.83[EUR][1000 genomes]
rs7148289	0.83[AFR][1000 genomes];0.95[EUR][1000 genomes]
rs7149152	0.82[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs7156953	0.82[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs7159809	0.92[AMR][1000 genomes];0.89[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs761547	0.94[EUR][1000 genomes]
rs8003734	0.89[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs8007313	0.86[AFR][1000 genomes]
rs8016170	0.83[AFR][1000 genomes];0.95[EUR][1000 genomes]
rs8016361	0.82[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs8017407	0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs8018169	0.83[AFR][1000 genomes];0.95[EUR][1000 genomes]
rs8022447	0.83[EUR][1000 genomes]
rs926802	0.89[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs9671381	0.89[EUR][1000 genomes];0.80[ASN][1000 genomes]

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:65017400-65027800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr14:65021400-65033400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
3	chr14:65021600-65047600	Weak transcription	Pancreas	Pancrea
4	chr14:65023400-65033400	Weak transcription	HUES6 Cell Line	embryonic stem cell
5	chr14:65023800-65027800	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
6	chr14:65023800-65028800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
7	chr14:65025000-65030200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin

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