Variant report

Variant	rs11158546
Chromosome Location	chr14:65102552-65102553
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr14:64969082..64972428-chr14:65101982..65105034,6	MCF-7	breast:
2	chr14:64968284..64972899-chr14:65099732..65106261,9	MCF-7	breast:
3	chr14:65096029..65097733-chr14:65101219..65102871,2	MCF-7	breast:
4	chr14:65005746..65011576-chr14:65100375..65105465,11	MCF-7	breast:
5	chr14:65101924..65103493-chr14:65105064..65108032,2	MCF-7	breast:
6	chr14:65101784..65105032-chr14:65169385..65172923,3	MCF-7	breast:
7	chr14:65005436..65008898-chr14:65101749..65105481,6	MCF-7	breast:

Variant related genes	Relation type
ENSG00000259116	Chromatin interaction
ENSG00000126804	Chromatin interaction
ENSG00000126803	Chromatin interaction
ENSG00000126822	Chromatin interaction
ENSG00000089775	Chromatin interaction

Extended variants
information (count: 36 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:35)

rs_ID	r²[population]
rs10138919	0.86[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs1040612	0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10431708	0.82[EUR][1000 genomes]
rs10498515	0.88[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs10873175	0.87[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1256146	0.80[EUR][1000 genomes]
rs1256150	0.84[EUR][1000 genomes]
rs12589322	0.88[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs12894050	0.93[EUR][1000 genomes]
rs12894807	0.89[AMR][1000 genomes];0.95[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1453005	0.82[EUR][1000 genomes]
rs2038270	0.86[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs2038273	0.86[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs2092718	0.81[AMR][1000 genomes]
rs2218994	0.82[EUR][1000 genomes]
rs34616731	0.81[EUR][1000 genomes]
rs4902288	0.83[EUR][1000 genomes]
rs4902295	0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4902296	0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4902297	0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4902298	0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7141346	0.82[AMR][1000 genomes];0.83[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs7148289	0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7149152	0.85[EUR][1000 genomes]
rs7156953	0.85[EUR][1000 genomes]
rs7159809	0.82[EUR][1000 genomes]
rs761547	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs8003734	0.89[AMR][1000 genomes];0.88[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs8016170	0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs8016361	0.85[EUR][1000 genomes]
rs8017407	0.86[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs8018169	0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs8022447	0.82[EUR][1000 genomes]
rs926802	0.89[AMR][1000 genomes];0.88[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs9671381	0.88[EUR][1000 genomes];0.88[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1049097	chr14:65027753-65202018	Weak transcription Strong transcription Enhancers Genic enhancers Transcr. at gene 5' and 3' Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:46 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:65092600-65103000	Weak transcription	Fetal Muscle Leg	muscle
2	chr14:65093000-65103000	Weak transcription	Fetal Intestine Small	intestine
3	chr14:65095800-65103000	Weak transcription	Esophagus	oesophagus
4	chr14:65095800-65103000	Weak transcription	Stomach Mucosa	stomach
5	chr14:65096000-65103000	Weak transcription	H1 Cell Line	embryonic stem cell
6	chr14:65096000-65103000	Weak transcription	HUES6 Cell Line	embryonic stem cell
7	chr14:65096000-65105600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
8	chr14:65096000-65106200	Weak transcription	HUES48 Cell Line	embryonic stem cell
9	chr14:65096200-65103000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
10	chr14:65096600-65103200	Weak transcription	NHEK	skin
11	chr14:65096800-65104200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
12	chr14:65096800-65104400	Weak transcription	NHDF-Ad	bronchial
13	chr14:65097800-65103200	Weak transcription	NHLF	lung
14	chr14:65099200-65103200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
15	chr14:65099400-65111600	Weak transcription	Osteobl	bone
16	chr14:65099600-65102800	Weak transcription	Brain Angular Gyrus	brain
17	chr14:65099600-65103000	Weak transcription	Brain Anterior Caudate	brain
18	chr14:65099600-65103000	Weak transcription	Brain Cingulate Gyrus	brain
19	chr14:65099600-65103000	Weak transcription	Brain Hippocampus Middle	brain
20	chr14:65099600-65103000	Weak transcription	Brain Inferior Temporal Lobe	brain
21	chr14:65099600-65103000	Weak transcription	Brain Substantia Nigra	brain
22	chr14:65099600-65103000	Weak transcription	Rectal Smooth Muscle	rectum
23	chr14:65099600-65103200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
24	chr14:65099600-65104400	Weak transcription	Fetal Lung	lung
25	chr14:65100200-65103000	Weak transcription	Fetal Intestine Large	intestine
26	chr14:65100200-65103000	Weak transcription	Rectal Mucosa Donor 29	rectum
27	chr14:65100400-65102800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
28	chr14:65100400-65102800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
29	chr14:65100400-65103000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
30	chr14:65100400-65103000	Weak transcription	Colonic Mucosa	Colon
31	chr14:65100400-65103000	Weak transcription	Rectal Mucosa Donor 31	rectum
32	chr14:65100400-65103200	Weak transcription	Primary B cells from peripheral blood	blood
33	chr14:65100600-65103000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
34	chr14:65100600-65103000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
35	chr14:65100600-65103000	Weak transcription	Sigmoid Colon	Sigmoid Colon
36	chr14:65100600-65103200	Weak transcription	Spleen	Spleen
37	chr14:65100800-65103000	Weak transcription	Placenta	Placenta
38	chr14:65100800-65103000	Weak transcription	Hela-S3	cervix
39	chr14:65101600-65103000	Weak transcription	HUES64 Cell Line	embryonic stem cell
40	chr14:65101600-65103000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
41	chr14:65101800-65103000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
42	chr14:65101800-65103400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
43	chr14:65101800-65104800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
44	chr14:65102000-65103000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
45	chr14:65102000-65103200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
46	chr14:65102400-65104600	Enhancers	A549	lung

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links