Variant report

Variant	rs9476790
Chromosome Location	chr6:15195078-15195079
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:15194327..15197318-chr6:15210091..15212891,2	K562	blood:
2	chr6:15177562..15179581-chr6:15194132..15195996,2	K562	blood:

Extended variants
information (count: 43 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:40)

rs_ID	r²[population]
rs13191127	1.00[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs13198600	1.00[AMR][1000 genomes]
rs13206138	1.00[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs13209122	0.80[EUR][1000 genomes]
rs13209721	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs13216551	1.00[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs13219748	0.80[EUR][1000 genomes]
rs34144528	1.00[AMR][1000 genomes]
rs34156913	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs34229995	1.00[AMR][1000 genomes]
rs34390534	0.80[EUR][1000 genomes]
rs34470245	1.00[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs34677259	0.80[EUR][1000 genomes]
rs34816087	1.00[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs34816488	1.00[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs34934295	1.00[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs35147300	1.00[AMR][1000 genomes]
rs35378362	0.80[EUR][1000 genomes]
rs35981238	0.80[EUR][1000 genomes]
rs71533639	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs71533640	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs71533642	1.00[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs71551025	0.80[EUR][1000 genomes]
rs71551028	1.00[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs71551030	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs71551032	0.80[EUR][1000 genomes]
rs71551033	1.00[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs71551034	1.00[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs71551040	1.00[AMR][1000 genomes]
rs71551041	1.00[AMR][1000 genomes]
rs71551042	1.00[AMR][1000 genomes]
rs7740407	0.80[EUR][1000 genomes]
rs9476782	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs9476783	0.86[AFR][1000 genomes];0.80[EUR][1000 genomes]
rs9476784	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs9476793	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs9476794	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs9476797	0.80[EUR][1000 genomes]
rs9476798	0.80[EUR][1000 genomes]
rs9476801	0.83[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830593	chr6:15049636-15244190	Enhancers Weak transcription Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
2	nsv830594	chr6:15171158-15261296	Flanking Active TSS Enhancers Weak transcription Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	22 gene(s)	inside rSNPs	diseases
3	esv1011225	chr6:15188151-15198037	Weak transcription Enhancers Flanking Active TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:15193600-15195400	Enhancers	Primary monocytes fromperipheralblood	blood
2	chr6:15194000-15195400	Flanking Active TSS	Primary neutrophils fromperipheralblood	blood
3	chr6:15194200-15195200	Enhancers	Primary B cells from cord blood	blood
4	chr6:15195000-15195200	Flanking Active TSS	Monocytes-CD14+_RO01746	blood

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