Variant report

Variant	rs71551033
Chromosome Location	chr6:15209073-15209074
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:15197961..15203179-chr6:15208962..15212023,5	K562	blood:
2	chr6:15208932..15212861-chr6:15365640..15367612,3	K562	blood:
3	chr6:15207140..15215305-chr6:15243300..15250227,33	K562	blood:
4	chr6:15087732..15091365-chr6:15208564..15213428,7	K562	blood:
5	chr6:15208660..15211196-chr6:15241386..15243147,2	MCF-7	breast:
6	chr6:15086750..15092578-chr6:15208564..15214623,13	K562	blood:
7	chr6:15197961..15202582-chr6:15208962..15214320,4	K562	blood:

Variant related genes	Relation type
ENSG00000008083	Chromatin interaction
ENSG00000271888	Chromatin interaction
ENSG00000235488	Chromatin interaction
ENSG00000234261	Chromatin interaction

Extended variants
information (count: 69 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:66)

rs_ID	r²[population]
rs13191127	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs13197919	1.00[AFR][1000 genomes];0.88[EUR][1000 genomes]
rs13198600	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs13201343	0.85[EUR][1000 genomes]
rs13203059	1.00[AFR][1000 genomes]
rs13203659	1.00[AFR][1000 genomes]
rs13203744	1.00[AFR][1000 genomes]
rs13206138	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs13206695	0.93[EUR][1000 genomes]
rs13209122	1.00[EUR][1000 genomes]
rs13209721	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs13210652	0.92[EUR][1000 genomes]
rs13213534	0.93[EUR][1000 genomes]
rs13215638	0.93[EUR][1000 genomes]
rs13216551	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs13216625	0.93[EUR][1000 genomes]
rs13219748	1.00[EUR][1000 genomes]
rs34048058	0.92[EUR][1000 genomes]
rs34144528	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs34156913	1.00[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs34229995	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs34340185	1.00[AFR][1000 genomes];0.88[EUR][1000 genomes]
rs34390534	1.00[EUR][1000 genomes]
rs34470245	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs34488826	0.92[EUR][1000 genomes]
rs34677259	1.00[EUR][1000 genomes]
rs34790337	0.92[EUR][1000 genomes]
rs34816087	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs34816488	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs34934295	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs35070076	1.00[AFR][1000 genomes]
rs35147300	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs35378362	1.00[EUR][1000 genomes]
rs35468212	0.85[EUR][1000 genomes]
rs35659244	1.00[AFR][1000 genomes];0.93[EUR][1000 genomes]
rs35660009	0.93[EUR][1000 genomes]
rs35981238	1.00[EUR][1000 genomes]
rs67845400	0.93[EUR][1000 genomes]
rs71533639	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs71533640	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs71533642	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs71551024	1.00[AFR][1000 genomes];0.85[EUR][1000 genomes]
rs71551025	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs71551028	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs71551030	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs71551032	1.00[EUR][1000 genomes]
rs71551034	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs71551035	0.96[EUR][1000 genomes]
rs71551040	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs71551041	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs71551042	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs71551043	0.88[EUR][1000 genomes]
rs71551045	1.00[AFR][1000 genomes];0.88[EUR][1000 genomes]
rs71551046	1.00[AFR][1000 genomes];0.88[EUR][1000 genomes]
rs7740407	1.00[EUR][1000 genomes]
rs9383028	0.93[EUR][1000 genomes]
rs9476760	0.93[EUR][1000 genomes]
rs9476761	0.93[EUR][1000 genomes]
rs9476782	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9476783	1.00[EUR][1000 genomes]
rs9476784	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9476790	1.00[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs9476793	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9476794	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9476797	1.00[EUR][1000 genomes]
rs9476798	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830593	chr6:15049636-15244190	Enhancers Weak transcription Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
2	nsv830594	chr6:15171158-15261296	Flanking Active TSS Enhancers Weak transcription Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	22 gene(s)	inside rSNPs	diseases
3	nsv1027010	chr6:15201803-15425629	Flanking Active TSS Enhancers Weak transcription Active TSS Genic enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	27 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:15206800-15210400	Weak transcription	K562	blood
2	chr6:15207400-15210400	Enhancers	HUES64 Cell Line	embryonic stem cell
3	chr6:15207600-15210200	Weak transcription	H9 Cell Line	embryonic stem cell
4	chr6:15208000-15209200	Enhancers	Cortex derived primary cultured neurospheres	brain
5	chr6:15208200-15209400	Enhancers	Primary monocytes fromperipheralblood	blood
6	chr6:15208200-15209600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
7	chr6:15208200-15209600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
8	chr6:15208200-15210600	Enhancers	iPS-18 Cell Line	embryonic stem cell
9	chr6:15208400-15209200	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
10	chr6:15208400-15210600	Enhancers	HUES6 Cell Line	embryonic stem cell
11	chr6:15208400-15210600	Enhancers	iPS-15b Cell Line	embryonic stem cell
12	chr6:15208400-15210800	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
13	chr6:15208400-15222000	Weak transcription	Right Atrium	heart
14	chr6:15208600-15209200	Enhancers	Monocytes-CD14+_RO01746	blood
15	chr6:15208600-15210400	Enhancers	HUES48 Cell Line	embryonic stem cell
16	chr6:15208600-15210600	Enhancers	H1 Cell Line	embryonic stem cell
17	chr6:15209000-15210400	Enhancers	iPS-20b Cell Line	embryonic stem cell
18	chr6:15209000-15211000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived

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