Variant report

Variant	rs13216625
Chromosome Location	chr6:15156264-15156265
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:15156210..15158890-chr6:15211476..15214661,3	K562	blood:
2	chr6:15155665..15157322-chr6:15249355..15251263,2	K562	blood:

Extended variants
information (count: 68 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:65)

rs_ID	r²[population]
rs13191127	0.93[EUR][1000 genomes]
rs13197919	0.82[EUR][1000 genomes]
rs13198600	0.85[EUR][1000 genomes]
rs13201343	0.85[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs13203059	0.83[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs13203659	0.83[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs13206138	0.93[EUR][1000 genomes]
rs13206695	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs13209122	0.93[EUR][1000 genomes]
rs13209721	0.93[EUR][1000 genomes]
rs13210652	0.85[EUR][1000 genomes]
rs13213534	0.86[EUR][1000 genomes]
rs13215638	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs13216551	0.93[EUR][1000 genomes]
rs13219748	0.93[EUR][1000 genomes]
rs34048058	0.85[EUR][1000 genomes]
rs34144528	0.82[EUR][1000 genomes]
rs34156913	0.85[EUR][1000 genomes]
rs34229995	0.85[EUR][1000 genomes]
rs34340185	0.82[EUR][1000 genomes]
rs34390534	0.93[EUR][1000 genomes]
rs34470245	0.93[EUR][1000 genomes]
rs34488826	0.85[EUR][1000 genomes]
rs34677259	0.93[EUR][1000 genomes]
rs34790337	0.85[EUR][1000 genomes]
rs34816087	0.93[EUR][1000 genomes]
rs34816488	0.93[EUR][1000 genomes]
rs34934295	0.93[EUR][1000 genomes]
rs35070076	0.83[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs35147300	0.85[EUR][1000 genomes]
rs35378362	0.93[EUR][1000 genomes]
rs35468212	0.85[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs35659244	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs35660009	0.86[EUR][1000 genomes]
rs35981238	0.93[EUR][1000 genomes]
rs67845400	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs71533639	0.93[EUR][1000 genomes]
rs71533640	0.93[EUR][1000 genomes]
rs71533642	0.93[EUR][1000 genomes]
rs71551024	0.83[AMR][1000 genomes]
rs71551025	0.83[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs71551028	0.93[EUR][1000 genomes]
rs71551030	0.93[EUR][1000 genomes]
rs71551032	0.93[EUR][1000 genomes]
rs71551033	0.93[EUR][1000 genomes]
rs71551034	0.93[EUR][1000 genomes]
rs71551035	0.89[EUR][1000 genomes]
rs71551040	0.85[EUR][1000 genomes]
rs71551041	0.85[EUR][1000 genomes]
rs71551042	0.82[EUR][1000 genomes]
rs71551043	0.82[EUR][1000 genomes]
rs71551045	0.82[EUR][1000 genomes]
rs71551046	0.82[EUR][1000 genomes]
rs7740407	1.00[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs9383028	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9476755	0.85[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs9476760	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9476761	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9476782	0.93[EUR][1000 genomes]
rs9476783	0.93[EUR][1000 genomes]
rs9476784	0.93[EUR][1000 genomes]
rs9476793	0.93[EUR][1000 genomes]
rs9476794	0.93[EUR][1000 genomes]
rs9476797	0.93[EUR][1000 genomes]
rs9476798	0.93[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830593	chr6:15049636-15244190	Enhancers Weak transcription Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
2	nsv1016007	chr6:15099585-15159098	Enhancers Weak transcription Flanking Active TSS Active TSS Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
3	esv2762580	chr6:15105917-15159110	Enhancers Bivalent Enhancer Weak transcription Flanking Active TSS Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:15154000-15158600	Weak transcription	K562	blood

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links