Variant report

Variant	rs9476797
Chromosome Location	chr6:15200357-15200358
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:15198097..15200419-chr6:15201470..15204020,2	K562	blood:
2	chr6:15197961..15202582-chr6:15208962..15214320,4	K562	blood:
3	chr6:15199227..15201551-chr6:15204261..15206100,2	K562	blood:
4	chr6:15197961..15203179-chr6:15208962..15212023,5	K562	blood:

Extended variants
information (count: 66 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:64)

rs_ID	r²[population]
rs13191127	1.00[EUR][1000 genomes]
rs13197919	0.88[EUR][1000 genomes]
rs13198600	0.92[EUR][1000 genomes]
rs13201343	0.85[EUR][1000 genomes]
rs13206138	1.00[EUR][1000 genomes]
rs13206695	0.93[EUR][1000 genomes]
rs13209122	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs13209721	1.00[EUR][1000 genomes]
rs13210652	1.00[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs13213534	0.83[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs13215638	0.93[EUR][1000 genomes]
rs13216551	1.00[EUR][1000 genomes]
rs13216625	0.93[EUR][1000 genomes]
rs13219748	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs34048058	1.00[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs34144528	0.88[EUR][1000 genomes]
rs34156913	0.92[EUR][1000 genomes]
rs34229995	0.92[EUR][1000 genomes]
rs34340185	0.88[EUR][1000 genomes]
rs34390534	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs34470245	1.00[EUR][1000 genomes]
rs34488826	0.92[EUR][1000 genomes]
rs34677259	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs34790337	1.00[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs34816087	1.00[EUR][1000 genomes]
rs34816488	1.00[EUR][1000 genomes]
rs34934295	1.00[EUR][1000 genomes]
rs35147300	0.92[EUR][1000 genomes]
rs35378362	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs35468212	0.85[EUR][1000 genomes]
rs35659244	0.93[EUR][1000 genomes]
rs35660009	1.00[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs35981238	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs36058592	1.00[AMR][1000 genomes]
rs67845400	0.93[EUR][1000 genomes]
rs71533639	1.00[EUR][1000 genomes]
rs71533640	1.00[EUR][1000 genomes]
rs71533642	1.00[EUR][1000 genomes]
rs71551024	0.85[EUR][1000 genomes]
rs71551025	1.00[EUR][1000 genomes]
rs71551028	1.00[EUR][1000 genomes]
rs71551030	1.00[EUR][1000 genomes]
rs71551032	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs71551033	1.00[EUR][1000 genomes]
rs71551034	1.00[EUR][1000 genomes]
rs71551035	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs71551040	0.92[EUR][1000 genomes]
rs71551041	0.92[EUR][1000 genomes]
rs71551042	0.88[EUR][1000 genomes]
rs71551043	0.88[EUR][1000 genomes]
rs71551045	0.88[EUR][1000 genomes]
rs71551046	0.88[EUR][1000 genomes]
rs7740407	1.00[EUR][1000 genomes]
rs9383028	0.93[EUR][1000 genomes]
rs9464767	0.86[AFR][1000 genomes]
rs9476760	0.93[EUR][1000 genomes]
rs9476761	0.93[EUR][1000 genomes]
rs9476782	1.00[EUR][1000 genomes]
rs9476783	1.00[EUR][1000 genomes]
rs9476784	1.00[EUR][1000 genomes]
rs9476790	0.80[EUR][1000 genomes]
rs9476793	1.00[EUR][1000 genomes]
rs9476794	1.00[EUR][1000 genomes]
rs9476798	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830593	chr6:15049636-15244190	Enhancers Weak transcription Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
2	nsv830594	chr6:15171158-15261296	Flanking Active TSS Enhancers Weak transcription Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	22 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:15199800-15201000	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr6:15200000-15200600	Enhancers	ES-I3 Cell Line	embryonic stem cell
3	chr6:15200000-15200600	Enhancers	Fetal Kidney	kidney
4	chr6:15200000-15200600	Enhancers	HMEC	breast
5	chr6:15200000-15200800	Enhancers	Breast Myoepithelial Primary Cells	Breast
6	chr6:15200000-15200800	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
7	chr6:15200000-15200800	Enhancers	NHEK	skin

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