Variant report

Variant	rs35659244
Chromosome Location	chr6:15161738-15161739
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:15159244..15161840-chr6:15169740..15172475,3	K562	blood:
2	chr6:15159787..15162228-chr6:15245080..15247075,2	MCF-7	breast:
3	chr6:15158330..15160167-chr6:15160268..15162625,2	K562	blood:

Variant related genes	Relation type
ENSG00000271888	Chromatin interaction
ENSG00000008083	Chromatin interaction

Extended variants
information (count: 66 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:65)

rs_ID	r²[population]
rs13191127	0.93[EUR][1000 genomes]
rs13197919	1.00[AFR][1000 genomes];0.82[EUR][1000 genomes]
rs13198600	1.00[AFR][1000 genomes];0.85[EUR][1000 genomes]
rs13201343	0.93[EUR][1000 genomes]
rs13203059	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs13203659	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs13206138	1.00[AFR][1000 genomes];0.93[EUR][1000 genomes]
rs13206695	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs13209122	0.93[EUR][1000 genomes]
rs13209721	0.93[EUR][1000 genomes]
rs13210652	0.85[EUR][1000 genomes]
rs13213534	0.86[EUR][1000 genomes]
rs13215638	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs13216551	1.00[AFR][1000 genomes];0.93[EUR][1000 genomes]
rs13216625	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs13219748	0.93[EUR][1000 genomes]
rs34048058	0.85[EUR][1000 genomes]
rs34144528	1.00[AFR][1000 genomes];0.82[EUR][1000 genomes]
rs34156913	0.85[EUR][1000 genomes]
rs34229995	1.00[AFR][1000 genomes];0.85[EUR][1000 genomes]
rs34340185	1.00[AFR][1000 genomes];0.82[EUR][1000 genomes]
rs34390534	0.93[EUR][1000 genomes]
rs34470245	0.93[EUR][1000 genomes]
rs34488826	0.85[EUR][1000 genomes]
rs34677259	0.93[EUR][1000 genomes]
rs34790337	0.85[EUR][1000 genomes]
rs34816087	0.93[EUR][1000 genomes]
rs34816488	1.00[AFR][1000 genomes];0.93[EUR][1000 genomes]
rs34934295	0.93[EUR][1000 genomes]
rs35070076	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs35147300	1.00[AFR][1000 genomes];0.85[EUR][1000 genomes]
rs35378362	0.93[EUR][1000 genomes]
rs35468212	0.93[EUR][1000 genomes]
rs35660009	0.86[EUR][1000 genomes]
rs35981238	0.93[EUR][1000 genomes]
rs67845400	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs71533639	0.93[EUR][1000 genomes]
rs71533640	0.93[EUR][1000 genomes]
rs71533642	1.00[AFR][1000 genomes];0.93[EUR][1000 genomes]
rs71551024	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs71551025	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs71551028	0.93[EUR][1000 genomes]
rs71551030	0.93[EUR][1000 genomes]
rs71551032	0.93[EUR][1000 genomes]
rs71551033	1.00[AFR][1000 genomes];0.93[EUR][1000 genomes]
rs71551034	1.00[AFR][1000 genomes];0.93[EUR][1000 genomes]
rs71551035	0.89[EUR][1000 genomes]
rs71551040	1.00[AFR][1000 genomes];0.85[EUR][1000 genomes]
rs71551041	1.00[AFR][1000 genomes];0.85[EUR][1000 genomes]
rs71551042	1.00[AFR][1000 genomes];0.82[EUR][1000 genomes]
rs71551043	0.82[EUR][1000 genomes]
rs71551045	1.00[AFR][1000 genomes];0.82[EUR][1000 genomes]
rs71551046	1.00[AFR][1000 genomes];0.82[EUR][1000 genomes]
rs7740407	0.83[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs9383028	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9476755	0.86[EUR][1000 genomes]
rs9476760	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9476761	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9476782	0.93[EUR][1000 genomes]
rs9476783	0.93[EUR][1000 genomes]
rs9476784	0.93[EUR][1000 genomes]
rs9476793	0.93[EUR][1000 genomes]
rs9476794	0.93[EUR][1000 genomes]
rs9476797	0.93[EUR][1000 genomes]
rs9476798	0.93[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830593	chr6:15049636-15244190	Enhancers Weak transcription Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:15160400-15162200	Enhancers	K562	blood
2	chr6:15160600-15161800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
3	chr6:15160600-15161800	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
4	chr6:15160600-15162200	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
5	chr6:15160800-15161800	Enhancers	Muscle Satellite Cultured Cells	--
6	chr6:15161000-15162200	Enhancers	Breast Myoepithelial Primary Cells	Breast
7	chr6:15161400-15161800	Enhancers	Osteobl	bone
8	chr6:15161600-15162200	Enhancers	iPS-15b Cell Line	embryonic stem cell

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