Variant report

Variant	rs35981238
Chromosome Location	chr6:15206716-15206717
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 66 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:63)

rs_ID	r²[population]
rs13191127	1.00[EUR][1000 genomes]
rs13197919	0.88[EUR][1000 genomes]
rs13198600	0.92[EUR][1000 genomes]
rs13201343	0.85[EUR][1000 genomes]
rs13206138	1.00[EUR][1000 genomes]
rs13206695	0.93[EUR][1000 genomes]
rs13209122	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs13209721	1.00[EUR][1000 genomes]
rs13210652	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs13213534	1.00[AFR][1000 genomes];0.83[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs13215638	0.93[EUR][1000 genomes]
rs13216551	1.00[EUR][1000 genomes]
rs13216625	0.93[EUR][1000 genomes]
rs13219748	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs34048058	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs34144528	0.88[EUR][1000 genomes]
rs34156913	0.92[EUR][1000 genomes]
rs34229995	0.92[EUR][1000 genomes]
rs34340185	0.88[EUR][1000 genomes]
rs34390534	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs34470245	1.00[EUR][1000 genomes]
rs34488826	0.92[EUR][1000 genomes]
rs34677259	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs34790337	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs34816087	1.00[EUR][1000 genomes]
rs34816488	1.00[EUR][1000 genomes]
rs34934295	1.00[EUR][1000 genomes]
rs35147300	0.92[EUR][1000 genomes]
rs35378362	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs35468212	0.85[EUR][1000 genomes]
rs35659244	0.93[EUR][1000 genomes]
rs35660009	1.00[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs36058592	1.00[AMR][1000 genomes]
rs67845400	0.93[EUR][1000 genomes]
rs71533639	1.00[EUR][1000 genomes]
rs71533640	1.00[EUR][1000 genomes]
rs71533642	1.00[EUR][1000 genomes]
rs71551024	0.85[EUR][1000 genomes]
rs71551025	1.00[EUR][1000 genomes]
rs71551028	1.00[EUR][1000 genomes]
rs71551030	1.00[EUR][1000 genomes]
rs71551032	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs71551033	1.00[EUR][1000 genomes]
rs71551034	1.00[EUR][1000 genomes]
rs71551035	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs71551040	0.92[EUR][1000 genomes]
rs71551041	0.92[EUR][1000 genomes]
rs71551042	0.88[EUR][1000 genomes]
rs71551043	0.88[EUR][1000 genomes]
rs71551045	0.88[EUR][1000 genomes]
rs71551046	0.88[EUR][1000 genomes]
rs7740407	1.00[EUR][1000 genomes]
rs9383028	0.93[EUR][1000 genomes]
rs9476760	0.93[EUR][1000 genomes]
rs9476761	0.93[EUR][1000 genomes]
rs9476782	1.00[EUR][1000 genomes]
rs9476783	1.00[EUR][1000 genomes]
rs9476784	1.00[EUR][1000 genomes]
rs9476790	0.80[EUR][1000 genomes]
rs9476793	1.00[EUR][1000 genomes]
rs9476794	1.00[EUR][1000 genomes]
rs9476797	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9476798	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830593	chr6:15049636-15244190	Enhancers Weak transcription Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
2	nsv830594	chr6:15171158-15261296	Flanking Active TSS Enhancers Weak transcription Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	22 gene(s)	inside rSNPs	diseases
3	nsv1027010	chr6:15201803-15425629	Flanking Active TSS Enhancers Weak transcription Active TSS Genic enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	27 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:29 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:15202400-15207400	Weak transcription	HUES64 Cell Line	embryonic stem cell
2	chr6:15205200-15206800	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
3	chr6:15205200-15207600	Enhancers	ES-I3 Cell Line	embryonic stem cell
4	chr6:15205400-15207200	Weak transcription	H9 Cell Line	embryonic stem cell
5	chr6:15205800-15208400	Weak transcription	HUES6 Cell Line	embryonic stem cell
6	chr6:15206000-15207000	Enhancers	Primary monocytes fromperipheralblood	blood
7	chr6:15206000-15207000	Enhancers	Primary neutrophils fromperipheralblood	blood
8	chr6:15206000-15207400	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
9	chr6:15206200-15207200	Weak transcription	H1 Cell Line	embryonic stem cell
10	chr6:15206400-15206800	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
11	chr6:15206400-15206800	Enhancers	Monocytes-CD14+_RO01746	blood
12	chr6:15206400-15207000	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
13	chr6:15206400-15207000	Enhancers	Primary hematopoietic stem cells short term culture	blood
14	chr6:15206400-15207000	Enhancers	HSMM	muscle
15	chr6:15206400-15207200	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
16	chr6:15206400-15207200	Enhancers	Muscle Satellite Cultured Cells	--
17	chr6:15206400-15207200	Enhancers	NHEK	skin
18	chr6:15206400-15209000	Enhancers	Osteobl	bone
19	chr6:15206600-15206800	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
20	chr6:15206600-15206800	Enhancers	K562	blood
21	chr6:15206600-15207000	Enhancers	HUES48 Cell Line	embryonic stem cell
22	chr6:15206600-15207000	Enhancers	iPS-15b Cell Line	embryonic stem cell
23	chr6:15206600-15207000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
24	chr6:15206600-15207000	Enhancers	NHDF-Ad	bronchial
25	chr6:15206600-15207400	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
26	chr6:15206600-15207400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
27	chr6:15206600-15207800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
28	chr6:15206600-15208200	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
29	chr6:15206600-15208400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell

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