Variant report

Variant	rs34677259
Chromosome Location	chr6:15212062-15212063
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:52)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:52 , 50 per page) page: 1 2

No.	Distal block	Cell Line	Cell type
1	chr6:14949007..14951082-chr6:15210495..15212064,2	K562	blood:
2	chr6:15210299..15212880-chr6:15287684..15289581,2	K562	blood:
3	chr6:14932206..14934474-chr6:15210552..15212825,2	K562	blood:
4	chr6:15210456..15213396-chr6:15484350..15486764,2	K562	blood:
5	chr6:15211420..15213536-chr6:15226040..15229427,3	K562	blood:
6	chr6:15210948..15212790-chr6:15250679..15252509,2	K562	blood:
7	chr6:15210482..15212890-chr6:15469167..15471491,2	K562	blood:
8	chr6:15066128..15068160-chr6:15211246..15212780,2	K562	blood:
9	chr6:15211374..15212897-chr6:15307612..15309960,2	K562	blood:
10	chr6:15211461..15213647-chr6:15364255..15366792,2	K562	blood:
11	chr6:15210394..15212835-chr6:15267234..15269130,2	K562	blood:
12	chr6:15210340..15213169-chr6:15236181..15239033,2	K562	blood:
13	chr6:15211292..15214275-chr6:15361319..15363079,2	K562	blood:
14	chr6:15208932..15212861-chr6:15365640..15367612,3	K562	blood:
15	chr6:15211327..15214253-chr6:15443742..15445346,2	K562	blood:
16	chr6:15211485..15213299-chr6:15388946..15391826,2	K562	blood:
17	chr6:15210517..15212766-chr6:15409106..15410866,2	K562	blood:
18	chr6:15207140..15215305-chr6:15243300..15250227,33	K562	blood:
19	chr6:15211420..15213536-chr6:15226040..15230630,4	K562	blood:
20	chr6:15211290..15214684-chr6:15251009..15254684,5	K562	blood:
21	chr6:14451791..14454017-chr6:15211412..15212993,2	K562	blood:
22	chr6:15210560..15212912-chr6:15507316..15509644,2	K562	blood:
23	chr6:15106242..15108900-chr6:15209959..15212920,4	K562	blood:
24	chr6:15211244..15213237-chr6:15398595..15400625,2	K562	blood:
25	chr6:15210286..15214983-chr6:15243593..15250047,26	K562	blood:
26	chr6:15209912..15212798-chr6:15319363..15322301,3	K562	blood:
27	chr6:15209904..15213484-chr6:15264466..15266560,3	K562	blood:
28	chr6:15210646..15214635-chr6:15377351..15380909,4	K562	blood:
29	chr6:15194327..15197318-chr6:15210091..15212891,2	K562	blood:
30	chr6:15211283..15212939-chr6:15357292..15360132,2	K562	blood:
31	chr6:15210626..15213577-chr6:15621189..15623887,2	K562	blood:
32	chr6:15084903..15086685-chr6:15210308..15212825,2	K562	blood:
33	chr6:15095661..15097537-chr6:15210477..15212559,2	K562	blood:
34	chr6:15156210..15158890-chr6:15211476..15214661,3	K562	blood:
35	chr6:15210423..15214380-chr6:15237542..15240375,3	K562	blood:
36	chr6:15211459..15213624-chr6:15378508..15380909,2	K562	blood:
37	chr6:15209991..15212845-chr6:15406600..15410606,5	K562	blood:
38	chr6:14867887..14869558-chr6:15211671..15213641,2	K562	blood:
39	chr6:15211347..15213015-chr6:15495121..15498048,2	K562	blood:
40	chr6:15211295..15213609-chr6:15314527..15316724,2	K562	blood:
41	chr6:15210366..15212939-chr6:15300598..15303177,2	K562	blood:
42	chr6:15211134..15212756-chr6:15293351..15295154,2	K562	blood:
43	chr6:15210476..15213974-chr6:15388595..15391826,3	K562	blood:
44	chr6:15120083..15121964-chr6:15210438..15212064,2	K562	blood:
45	chr6:15087732..15091365-chr6:15208564..15213428,7	K562	blood:
46	chr6:15086750..15092578-chr6:15208564..15214623,13	K562	blood:
47	chr6:14685709..14687762-chr6:15211791..15214339,2	K562	blood:
48	chr6:15211281..15212832-chr6:15299599..15301469,2	K562	blood:
49	chr6:15211412..15213944-chr6:16209890..16212085,2	K562	blood:
50	chr6:15211921..15214474-chr6:15385655..15388402,2	K562	blood:

No data

Variant related genes	Relation type
ENSG00000201367	Chromatin interaction
ENSG00000008083	Chromatin interaction
ENSG00000234261	Chromatin interaction
ENSG00000235488	Chromatin interaction
ENSG00000271888	Chromatin interaction

Extended variants
information (count: 66 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:63)

rs_ID	r²[population]
rs13191127	1.00[EUR][1000 genomes]
rs13197919	0.88[EUR][1000 genomes]
rs13198600	0.92[EUR][1000 genomes]
rs13201343	0.85[EUR][1000 genomes]
rs13206138	1.00[EUR][1000 genomes]
rs13206695	0.93[EUR][1000 genomes]
rs13209122	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs13209721	1.00[EUR][1000 genomes]
rs13210652	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs13213534	1.00[AFR][1000 genomes];0.83[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs13215638	0.93[EUR][1000 genomes]
rs13216551	1.00[EUR][1000 genomes]
rs13216625	0.93[EUR][1000 genomes]
rs13219748	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs34048058	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs34144528	0.88[EUR][1000 genomes]
rs34156913	0.92[EUR][1000 genomes]
rs34229995	0.92[EUR][1000 genomes]
rs34340185	0.88[EUR][1000 genomes]
rs34390534	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs34470245	1.00[EUR][1000 genomes]
rs34488826	0.92[EUR][1000 genomes]
rs34790337	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs34816087	1.00[EUR][1000 genomes]
rs34816488	1.00[EUR][1000 genomes]
rs34934295	1.00[EUR][1000 genomes]
rs35147300	0.92[EUR][1000 genomes]
rs35378362	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs35468212	0.85[EUR][1000 genomes]
rs35659244	0.93[EUR][1000 genomes]
rs35660009	1.00[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs35981238	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs36058592	1.00[AMR][1000 genomes]
rs67845400	0.93[EUR][1000 genomes]
rs71533639	1.00[EUR][1000 genomes]
rs71533640	1.00[EUR][1000 genomes]
rs71533642	1.00[EUR][1000 genomes]
rs71551024	0.85[EUR][1000 genomes]
rs71551025	1.00[EUR][1000 genomes]
rs71551028	1.00[EUR][1000 genomes]
rs71551030	1.00[EUR][1000 genomes]
rs71551032	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs71551033	1.00[EUR][1000 genomes]
rs71551034	1.00[EUR][1000 genomes]
rs71551035	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs71551040	0.92[EUR][1000 genomes]
rs71551041	0.92[EUR][1000 genomes]
rs71551042	0.88[EUR][1000 genomes]
rs71551043	0.88[EUR][1000 genomes]
rs71551045	0.88[EUR][1000 genomes]
rs71551046	0.88[EUR][1000 genomes]
rs7740407	1.00[EUR][1000 genomes]
rs9383028	0.93[EUR][1000 genomes]
rs9476760	0.93[EUR][1000 genomes]
rs9476761	0.93[EUR][1000 genomes]
rs9476782	1.00[EUR][1000 genomes]
rs9476783	1.00[EUR][1000 genomes]
rs9476784	1.00[EUR][1000 genomes]
rs9476790	0.80[EUR][1000 genomes]
rs9476793	1.00[EUR][1000 genomes]
rs9476794	1.00[EUR][1000 genomes]
rs9476797	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9476798	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830593	chr6:15049636-15244190	Enhancers Weak transcription Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
2	nsv830594	chr6:15171158-15261296	Flanking Active TSS Enhancers Weak transcription Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	22 gene(s)	inside rSNPs	diseases
3	nsv1027010	chr6:15201803-15425629	Flanking Active TSS Enhancers Weak transcription Active TSS Genic enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	27 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:15208400-15222000	Weak transcription	Right Atrium	heart
2	chr6:15211400-15218200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
3	chr6:15211600-15222200	Weak transcription	H9 Cell Line	embryonic stem cell
4	chr6:15211800-15212200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
5	chr6:15212000-15227600	Weak transcription	ES-I3 Cell Line	embryonic stem cell

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