Variant report

Variant	rs71551024
Chromosome Location	chr6:15145672-15145673
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:15143787..15146280-chr6:15158034..15160190,2	K562	blood:
2	chr6:15144340..15146667-chr6:15148737..15150328,2	K562	blood:
3	chr6:15143619..15146318-chr6:15151883..15153386,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000264687	Chromatin interaction

Extended variants
information (count: 58 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:55)

rs_ID	r²[population]
rs13191127	0.85[EUR][1000 genomes]
rs13197919	1.00[AFR][1000 genomes]
rs13198600	1.00[AFR][1000 genomes]
rs13203059	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs13203659	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs13206138	1.00[AFR][1000 genomes];0.85[EUR][1000 genomes]
rs13206695	1.00[AMR][1000 genomes]
rs13209122	0.85[EUR][1000 genomes]
rs13209721	0.85[EUR][1000 genomes]
rs13215638	0.83[AMR][1000 genomes]
rs13216551	1.00[AFR][1000 genomes];0.85[EUR][1000 genomes]
rs13216625	0.83[AMR][1000 genomes]
rs13219748	0.85[EUR][1000 genomes]
rs34144528	1.00[AFR][1000 genomes]
rs34229995	1.00[AFR][1000 genomes]
rs34340185	1.00[AFR][1000 genomes]
rs34390534	0.85[EUR][1000 genomes]
rs34470245	0.85[EUR][1000 genomes]
rs34677259	0.85[EUR][1000 genomes]
rs34816087	0.85[EUR][1000 genomes]
rs34816488	1.00[AFR][1000 genomes];0.85[EUR][1000 genomes]
rs34934295	0.85[EUR][1000 genomes]
rs35070076	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs35147300	1.00[AFR][1000 genomes]
rs35378362	0.85[EUR][1000 genomes]
rs35659244	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs35981238	0.85[EUR][1000 genomes]
rs67845400	0.83[AMR][1000 genomes]
rs71533639	0.85[EUR][1000 genomes]
rs71533640	0.85[EUR][1000 genomes]
rs71533642	1.00[AFR][1000 genomes];0.85[EUR][1000 genomes]
rs71551025	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs71551028	0.85[EUR][1000 genomes]
rs71551030	0.85[EUR][1000 genomes]
rs71551032	0.85[EUR][1000 genomes]
rs71551033	1.00[AFR][1000 genomes];0.85[EUR][1000 genomes]
rs71551034	1.00[AFR][1000 genomes];0.85[EUR][1000 genomes]
rs71551035	0.81[EUR][1000 genomes]
rs71551040	1.00[AFR][1000 genomes]
rs71551041	1.00[AFR][1000 genomes]
rs71551042	1.00[AFR][1000 genomes]
rs71551045	1.00[AFR][1000 genomes]
rs71551046	1.00[AFR][1000 genomes]
rs7740407	0.83[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs9383028	1.00[AMR][1000 genomes]
rs9476755	0.93[EUR][1000 genomes]
rs9476760	0.83[AMR][1000 genomes]
rs9476761	0.83[AMR][1000 genomes]
rs9476782	0.85[EUR][1000 genomes]
rs9476783	0.85[EUR][1000 genomes]
rs9476784	0.85[EUR][1000 genomes]
rs9476793	0.85[EUR][1000 genomes]
rs9476794	0.85[EUR][1000 genomes]
rs9476797	0.85[EUR][1000 genomes]
rs9476798	0.85[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830593	chr6:15049636-15244190	Enhancers Weak transcription Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
2	nsv1016007	chr6:15099585-15159098	Enhancers Weak transcription Flanking Active TSS Active TSS Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
3	esv2762580	chr6:15105917-15159110	Enhancers Bivalent Enhancer Weak transcription Flanking Active TSS Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:15144800-15146400	Enhancers	Monocytes-CD14+_RO01746	blood
2	chr6:15145400-15148400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
3	chr6:15145600-15146600	Enhancers	Primary monocytes fromperipheralblood	blood

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