Variant report

No.	Distal block	Cell Line	Cell type
1	chr6:15133229..15135738-chr6:15147564..15149146,2	K562	blood:
2	chr6:15147856..15151805-chr6:15244004..15248641,4	MCF-7	breast:
3	chr6:15096022..15098594-chr6:15145992..15148961,2	K562	blood:

Variant related genes	Relation type
ENSG00000271888	Chromatin interaction
ENSG00000008083	Chromatin interaction

rSNPs within LD-proxies of this variant (count:31)

rs_ID	r²[population]
rs13197919	1.00[AFR][1000 genomes]
rs13198600	1.00[AFR][1000 genomes]
rs13203059	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs13206138	1.00[AFR][1000 genomes]
rs13206695	1.00[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs13215638	0.83[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs13216551	1.00[AFR][1000 genomes]
rs13216625	0.83[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs34144528	1.00[AFR][1000 genomes]
rs34229995	1.00[AFR][1000 genomes]
rs34340185	1.00[AFR][1000 genomes]
rs34816488	1.00[AFR][1000 genomes]
rs35070076	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs35147300	1.00[AFR][1000 genomes]
rs35659244	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs67845400	0.83[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs71533642	1.00[AFR][1000 genomes]
rs71551024	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs71551025	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs71551033	1.00[AFR][1000 genomes]
rs71551034	1.00[AFR][1000 genomes]
rs71551040	1.00[AFR][1000 genomes]
rs71551041	1.00[AFR][1000 genomes]
rs71551042	1.00[AFR][1000 genomes]
rs71551045	1.00[AFR][1000 genomes]
rs71551046	1.00[AFR][1000 genomes]
rs7740407	0.83[AMR][1000 genomes]
rs9383028	1.00[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs9476755	1.00[EUR][1000 genomes]
rs9476760	0.83[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs9476761	0.83[AMR][1000 genomes];0.86[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830593	chr6:15049636-15244190	Enhancers Weak transcription Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
2	nsv1016007	chr6:15099585-15159098	Enhancers Weak transcription Flanking Active TSS Active TSS Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
3	esv2762580	chr6:15105917-15159110	Enhancers Bivalent Enhancer Weak transcription Flanking Active TSS Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:15145400-15148400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
2	chr6:15146400-15151000	Weak transcription	Monocytes-CD14+_RO01746	blood
3	chr6:15146600-15150600	Weak transcription	Primary monocytes fromperipheralblood	blood
4	chr6:15148000-15149600	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

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