Variant report
| Variant | rs13203059 |
|---|---|
| Chromosome Location | chr6:15153495-15153496 |
| allele | A/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:1 , 50 per page) page:
1
| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr6:15106983..15108831-chr6:15151531..15154353,2 | K562 | blood: |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:31)
| rs_ID | r2[population] |
|---|---|
| rs13197919 | 1.00[AFR][1000 genomes] |
| rs13198600 | 1.00[AFR][1000 genomes] |
| rs13203659 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs13206138 | 1.00[AFR][1000 genomes] |
| rs13206695 | 1.00[AMR][1000 genomes];0.86[EUR][1000 genomes] |
| rs13215638 | 0.83[AMR][1000 genomes];0.86[EUR][1000 genomes] |
| rs13216551 | 1.00[AFR][1000 genomes] |
| rs13216625 | 0.83[AMR][1000 genomes];0.86[EUR][1000 genomes] |
| rs34144528 | 1.00[AFR][1000 genomes] |
| rs34229995 | 1.00[AFR][1000 genomes] |
| rs34340185 | 1.00[AFR][1000 genomes] |
| rs34816488 | 1.00[AFR][1000 genomes] |
| rs35070076 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs35147300 | 1.00[AFR][1000 genomes] |
| rs35659244 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.86[EUR][1000 genomes] |
| rs67845400 | 0.83[AMR][1000 genomes];0.86[EUR][1000 genomes] |
| rs71533642 | 1.00[AFR][1000 genomes] |
| rs71551024 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes] |
| rs71551025 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs71551033 | 1.00[AFR][1000 genomes] |
| rs71551034 | 1.00[AFR][1000 genomes] |
| rs71551040 | 1.00[AFR][1000 genomes] |
| rs71551041 | 1.00[AFR][1000 genomes] |
| rs71551042 | 1.00[AFR][1000 genomes] |
| rs71551045 | 1.00[AFR][1000 genomes] |
| rs71551046 | 1.00[AFR][1000 genomes] |
| rs7740407 | 0.83[AMR][1000 genomes] |
| rs9383028 | 1.00[AMR][1000 genomes];0.86[EUR][1000 genomes] |
| rs9476755 | 1.00[EUR][1000 genomes] |
| rs9476760 | 0.83[AMR][1000 genomes];0.86[EUR][1000 genomes] |
| rs9476761 | 0.83[AMR][1000 genomes];0.86[EUR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv830593 | chr6:15049636-15244190 | Enhancers Weak transcription Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh | TF binding regionCpG islandChromatin interactive regionlncRNA | 12 gene(s) | inside rSNPs | diseases |
| 2 | nsv1016007 | chr6:15099585-15159098 | Enhancers Weak transcription Flanking Active TSS Active TSS Genic enhancers Bivalent Enhancer | TF binding regionCpG islandChromatin interactive regionlncRNA | 7 gene(s) | inside rSNPs | diseases |
| 3 | esv2762580 | chr6:15105917-15159110 | Enhancers Bivalent Enhancer Weak transcription Flanking Active TSS Active TSS Genic enhancers | TF binding regionCpG islandChromatin interactive regionlncRNA | 7 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr6:15153000-15154000 | Enhancers | K562 | blood |
