Variant report

Variant	rs35147300
Chromosome Location	chr6:15254767-15254768
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:15253847..15256230-chr6:15382765..15385020,2	MCF-7	breast:
2	chr6:15253059..15254782-chr6:15298383..15301127,2	K562	blood:
3	chr6:14888308..14890393-chr6:15254270..15256315,2	MCF-7	breast:
4	chr6:15254326..15257195-chr6:15265565..15267643,2	MCF-7	breast:

Extended variants
information (count: 70 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:64)

rs_ID	r²[population]
rs13191127	1.00[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs13197919	1.00[AFR][1000 genomes];0.96[EUR][1000 genomes]
rs13198600	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs13203059	1.00[AFR][1000 genomes]
rs13203659	1.00[AFR][1000 genomes]
rs13203744	1.00[AFR][1000 genomes]
rs13206138	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs13206695	0.85[EUR][1000 genomes]
rs13209122	0.92[EUR][1000 genomes]
rs13209721	1.00[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs13210652	0.84[EUR][1000 genomes]
rs13213534	0.85[EUR][1000 genomes]
rs13215638	0.85[EUR][1000 genomes]
rs13216551	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs13216625	0.85[EUR][1000 genomes]
rs13219748	0.92[EUR][1000 genomes]
rs34048058	0.84[EUR][1000 genomes]
rs34144528	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs34156913	1.00[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs34229995	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs34340185	1.00[AFR][1000 genomes];0.96[EUR][1000 genomes]
rs34390534	0.92[EUR][1000 genomes]
rs34470245	1.00[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs34488826	1.00[EUR][1000 genomes]
rs34677259	0.92[EUR][1000 genomes]
rs34790337	0.84[EUR][1000 genomes]
rs34816087	1.00[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs34816488	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs34934295	1.00[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs35070076	1.00[AFR][1000 genomes]
rs35378362	0.92[EUR][1000 genomes]
rs35659244	1.00[AFR][1000 genomes];0.85[EUR][1000 genomes]
rs35660009	0.85[EUR][1000 genomes]
rs35981238	0.92[EUR][1000 genomes]
rs67845400	0.85[EUR][1000 genomes]
rs71533639	1.00[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs71533640	1.00[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs71533642	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs71551024	1.00[AFR][1000 genomes]
rs71551025	1.00[AFR][1000 genomes];0.92[EUR][1000 genomes]
rs71551028	1.00[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs71551030	1.00[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs71551032	0.92[EUR][1000 genomes]
rs71551033	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs71551034	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs71551035	0.89[EUR][1000 genomes]
rs71551040	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs71551041	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs71551042	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs71551043	0.96[EUR][1000 genomes]
rs71551045	1.00[AFR][1000 genomes];0.96[EUR][1000 genomes]
rs71551046	1.00[AFR][1000 genomes];0.96[EUR][1000 genomes]
rs7740407	0.92[EUR][1000 genomes]
rs9383028	0.85[EUR][1000 genomes]
rs9476760	0.85[EUR][1000 genomes]
rs9476761	0.85[EUR][1000 genomes]
rs9476782	1.00[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs9476783	0.92[EUR][1000 genomes]
rs9476784	1.00[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs9476790	1.00[AMR][1000 genomes]
rs9476793	1.00[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs9476794	1.00[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs9476797	0.92[EUR][1000 genomes]
rs9476798	0.92[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830594	chr6:15171158-15261296	Flanking Active TSS Enhancers Weak transcription Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	22 gene(s)	inside rSNPs	diseases
2	nsv1027010	chr6:15201803-15425629	Flanking Active TSS Enhancers Weak transcription Active TSS Genic enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	27 gene(s)	inside rSNPs	diseases
3	nsv538140	chr6:15217899-15547127	Enhancers Weak transcription Strong transcription Bivalent Enhancer Flanking Active TSS Genic enhancers Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases
4	nsv1030558	chr6:15234675-15449137	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Genic enhancers Active TSS Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	27 gene(s)	inside rSNPs	diseases
5	nsv538141	chr6:15234675-15509163	Enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	28 gene(s)	inside rSNPs	diseases
6	nsv538142	chr6:15243960-15404893	Weak transcription Enhancers Flanking Active TSS Genic enhancers Active TSS Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	27 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:120 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:15249600-15256200	Weak transcription	Lung	lung
2	chr6:15249800-15256200	Weak transcription	Ovary	ovary
3	chr6:15250000-15255000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
4	chr6:15250000-15255600	Weak transcription	Colonic Mucosa	Colon
5	chr6:15250000-15255600	Weak transcription	Colon Smooth Muscle	Colon
6	chr6:15250000-15255600	Weak transcription	Right Atrium	heart
7	chr6:15250000-15256200	Weak transcription	Aorta	Aorta
8	chr6:15250000-15256200	Weak transcription	Placenta Amnion	Placenta Amnion
9	chr6:15250000-15256800	Weak transcription	Rectal Smooth Muscle	rectum
10	chr6:15250000-15262000	Enhancers	Primary T killer naive cells fromperipheralblood	blood
11	chr6:15250200-15256000	Enhancers	Primary hematopoietic stem cells	blood
12	chr6:15250200-15259200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
13	chr6:15250400-15255800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
14	chr6:15250400-15256600	Weak transcription	Muscle Satellite Cultured Cells	--
15	chr6:15250400-15257000	Enhancers	Thymus	Thymus
16	chr6:15250400-15257000	Enhancers	Dnd41	blood
17	chr6:15250400-15258600	Enhancers	Primary T killer memory cells from peripheral blood	blood
18	chr6:15250400-15259200	Weak transcription	HMEC	breast
19	chr6:15250600-15255800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
20	chr6:15250800-15256400	Enhancers	Primary monocytes fromperipheralblood	blood
21	chr6:15251000-15256000	Weak transcription	Fetal Brain Female	brain
22	chr6:15251000-15257000	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
23	chr6:15251200-15255000	Enhancers	Stomach Mucosa	stomach
24	chr6:15251200-15279400	Weak transcription	A549	lung
25	chr6:15251400-15256200	Weak transcription	Stomach Smooth Muscle	stomach
26	chr6:15251400-15257400	Enhancers	Primary B cells from peripheral blood	blood
27	chr6:15251800-15255800	Weak transcription	Right Ventricle	heart
28	chr6:15251800-15256000	Weak transcription	Fetal Kidney	kidney
29	chr6:15251800-15256200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
30	chr6:15252200-15255000	Enhancers	Primary T helper naive cells from peripheral blood	blood
31	chr6:15252200-15257000	Flanking Active TSS	GM12878-XiMat	blood
32	chr6:15252400-15254800	Enhancers	H9 Cell Line	embryonic stem cell
33	chr6:15252400-15254800	Weak transcription	Pancreas	Pancrea
34	chr6:15252400-15256200	Enhancers	Fetal Heart	heart
35	chr6:15252400-15260000	Genic enhancers	Fetal Thymus	thymus
36	chr6:15252600-15254800	Enhancers	Fetal Intestine Small	intestine
37	chr6:15252600-15257200	Enhancers	Small Intestine	intestine
38	chr6:15252800-15255800	Enhancers	Duodenum Mucosa	Duodenum
39	chr6:15252800-15256000	Weak transcription	Duodenum Smooth Muscle	Duodenum
40	chr6:15252800-15256000	Weak transcription	Rectal Mucosa Donor 29	rectum
41	chr6:15253000-15254800	Genic enhancers	H1 Cell Line	embryonic stem cell
42	chr6:15253200-15255800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
43	chr6:15253200-15256200	Enhancers	Spleen	Spleen
44	chr6:15253200-15262000	Enhancers	Primary T helper naive cells fromperipheralblood	blood
45	chr6:15253200-15262200	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
46	chr6:15253200-15269600	Enhancers	Primary T helper cells fromperipheralblood	blood
47	chr6:15253400-15257400	Enhancers	Primary neutrophils fromperipheralblood	blood
48	chr6:15253600-15254800	Transcr. at gene 5' and 3'	Primary T helper 17 cells PMA-I stimulated	--
49	chr6:15253600-15255000	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
50	chr6:15253600-15255000	Enhancers	Brain Substantia Nigra	brain

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