Variant report

Variant	rs7740407
Chromosome Location	chr6:15170268-15170269
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:15169846..15172434-chr6:15181628..15183305,2	K562	blood:
2	chr6:15159244..15161840-chr6:15169740..15172475,3	K562	blood:
3	chr6:15168254..15169960-chr6:15170062..15172300,2	K562	blood:
4	chr6:15169846..15172117-chr6:15181369..15183305,2	K562	blood:

Extended variants
information (count: 72 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:71)

rs_ID	r²[population]
rs13191127	1.00[EUR][1000 genomes]
rs13197919	0.88[EUR][1000 genomes]
rs13198600	0.92[EUR][1000 genomes]
rs13201343	0.85[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs13203059	0.83[AMR][1000 genomes]
rs13203659	0.83[AMR][1000 genomes]
rs13206138	1.00[EUR][1000 genomes]
rs13206695	0.83[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs13209122	1.00[EUR][1000 genomes]
rs13209721	1.00[EUR][1000 genomes]
rs13210652	0.92[EUR][1000 genomes]
rs13213534	0.93[EUR][1000 genomes]
rs13215638	1.00[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs13216551	1.00[EUR][1000 genomes]
rs13216625	1.00[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs13219748	1.00[EUR][1000 genomes]
rs34048058	0.92[EUR][1000 genomes]
rs34144528	0.88[EUR][1000 genomes]
rs34156913	0.92[EUR][1000 genomes]
rs34229995	0.92[EUR][1000 genomes]
rs34340185	0.88[EUR][1000 genomes]
rs34390534	1.00[EUR][1000 genomes]
rs34470245	1.00[EUR][1000 genomes]
rs34488826	0.92[EUR][1000 genomes]
rs34677259	1.00[EUR][1000 genomes]
rs34790337	0.92[EUR][1000 genomes]
rs34816087	1.00[EUR][1000 genomes]
rs34816488	1.00[EUR][1000 genomes]
rs34934295	1.00[EUR][1000 genomes]
rs35070076	0.83[AMR][1000 genomes]
rs35147300	0.92[EUR][1000 genomes]
rs35378362	1.00[EUR][1000 genomes]
rs35468212	0.85[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs35659244	0.83[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs35660009	0.93[EUR][1000 genomes]
rs35981238	1.00[EUR][1000 genomes]
rs67845400	1.00[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs71533639	1.00[EUR][1000 genomes]
rs71533640	1.00[EUR][1000 genomes]
rs71533642	1.00[EUR][1000 genomes]
rs71551024	0.83[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs71551025	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs71551028	1.00[EUR][1000 genomes]
rs71551030	1.00[EUR][1000 genomes]
rs71551032	1.00[EUR][1000 genomes]
rs71551033	1.00[EUR][1000 genomes]
rs71551034	1.00[EUR][1000 genomes]
rs71551035	0.96[EUR][1000 genomes]
rs71551040	0.92[EUR][1000 genomes]
rs71551041	0.92[EUR][1000 genomes]
rs71551042	0.88[EUR][1000 genomes]
rs71551043	0.88[EUR][1000 genomes]
rs71551045	0.88[EUR][1000 genomes]
rs71551046	0.88[EUR][1000 genomes]
rs73373456	0.90[AFR][1000 genomes]
rs73373464	0.90[AFR][1000 genomes]
rs73373470	0.90[AFR][1000 genomes]
rs73373480	0.90[AFR][1000 genomes]
rs73373493	0.90[AFR][1000 genomes]
rs9383028	0.83[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs9476755	0.85[AMR][1000 genomes]
rs9476760	1.00[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs9476761	1.00[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs9476782	1.00[EUR][1000 genomes]
rs9476783	1.00[EUR][1000 genomes]
rs9476784	1.00[EUR][1000 genomes]
rs9476790	0.80[EUR][1000 genomes]
rs9476793	1.00[EUR][1000 genomes]
rs9476794	1.00[EUR][1000 genomes]
rs9476797	1.00[EUR][1000 genomes]
rs9476798	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830593	chr6:15049636-15244190	Enhancers Weak transcription Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:15170000-15170800	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr6:15170000-15172200	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
3	chr6:15170000-15172200	Enhancers	HUES64 Cell Line	embryonic stem cell
4	chr6:15170000-15172200	Enhancers	iPS-15b Cell Line	embryonic stem cell
5	chr6:15170000-15172200	Enhancers	iPS-18 Cell Line	embryonic stem cell
6	chr6:15170000-15172400	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
7	chr6:15170200-15171600	Bivalent Enhancer	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
8	chr6:15170200-15171600	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
9	chr6:15170200-15172200	Enhancers	ES-I3 Cell Line	embryonic stem cell
10	chr6:15170200-15172200	Enhancers	H1 Cell Line	embryonic stem cell
11	chr6:15170200-15172200	Enhancers	HUES48 Cell Line	embryonic stem cell
12	chr6:15170200-15172200	Enhancers	HUES6 Cell Line	embryonic stem cell
13	chr6:15170200-15172200	Enhancers	iPS-20b Cell Line	embryonic stem cell

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