Variant report

Variant	rs34488826
Chromosome Location	chr6:15255694-15255695
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:15253847..15256230-chr6:15382765..15385020,2	MCF-7	breast:
2	chr6:14888308..14890393-chr6:15254270..15256315,2	MCF-7	breast:
3	chr6:15254326..15257195-chr6:15265565..15267643,2	MCF-7	breast:

Extended variants
information (count: 64 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:58)

rs_ID	r²[population]
rs13191127	0.92[EUR][1000 genomes]
rs13197919	0.96[EUR][1000 genomes]
rs13198600	1.00[EUR][1000 genomes]
rs13206138	0.92[EUR][1000 genomes]
rs13206695	0.85[EUR][1000 genomes]
rs13209122	0.92[EUR][1000 genomes]
rs13209721	0.92[EUR][1000 genomes]
rs13210652	0.84[EUR][1000 genomes]
rs13213534	0.85[EUR][1000 genomes]
rs13215638	0.85[EUR][1000 genomes]
rs13216551	0.92[EUR][1000 genomes]
rs13216625	0.85[EUR][1000 genomes]
rs13219748	0.92[EUR][1000 genomes]
rs34048058	0.84[EUR][1000 genomes]
rs34144528	0.96[EUR][1000 genomes]
rs34156913	0.84[EUR][1000 genomes]
rs34229995	1.00[EUR][1000 genomes]
rs34340185	0.96[EUR][1000 genomes]
rs34390534	0.92[EUR][1000 genomes]
rs34470245	0.92[EUR][1000 genomes]
rs34677259	0.92[EUR][1000 genomes]
rs34790337	0.84[EUR][1000 genomes]
rs34816087	0.92[EUR][1000 genomes]
rs34816488	0.92[EUR][1000 genomes]
rs34934295	0.92[EUR][1000 genomes]
rs35147300	1.00[EUR][1000 genomes]
rs35378362	0.92[EUR][1000 genomes]
rs35659244	0.85[EUR][1000 genomes]
rs35660009	0.85[EUR][1000 genomes]
rs35981238	0.92[EUR][1000 genomes]
rs67845400	0.85[EUR][1000 genomes]
rs71533639	0.92[EUR][1000 genomes]
rs71533640	0.92[EUR][1000 genomes]
rs71533642	0.92[EUR][1000 genomes]
rs71551025	0.92[EUR][1000 genomes]
rs71551028	0.92[EUR][1000 genomes]
rs71551030	0.92[EUR][1000 genomes]
rs71551032	0.92[EUR][1000 genomes]
rs71551033	0.92[EUR][1000 genomes]
rs71551034	0.92[EUR][1000 genomes]
rs71551035	0.89[EUR][1000 genomes]
rs71551040	1.00[EUR][1000 genomes]
rs71551041	1.00[EUR][1000 genomes]
rs71551042	0.96[EUR][1000 genomes]
rs71551043	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs71551045	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs71551046	0.96[EUR][1000 genomes]
rs7740407	0.92[EUR][1000 genomes]
rs9383028	0.85[EUR][1000 genomes]
rs9476760	0.85[EUR][1000 genomes]
rs9476761	0.85[EUR][1000 genomes]
rs9476782	0.92[EUR][1000 genomes]
rs9476783	0.92[EUR][1000 genomes]
rs9476784	0.92[EUR][1000 genomes]
rs9476793	0.92[EUR][1000 genomes]
rs9476794	0.92[EUR][1000 genomes]
rs9476797	0.92[EUR][1000 genomes]
rs9476798	0.92[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830594	chr6:15171158-15261296	Flanking Active TSS Enhancers Weak transcription Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	22 gene(s)	inside rSNPs	diseases
2	nsv1027010	chr6:15201803-15425629	Flanking Active TSS Enhancers Weak transcription Active TSS Genic enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	27 gene(s)	inside rSNPs	diseases
3	nsv538140	chr6:15217899-15547127	Enhancers Weak transcription Strong transcription Bivalent Enhancer Flanking Active TSS Genic enhancers Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases
4	nsv1030558	chr6:15234675-15449137	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Genic enhancers Active TSS Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	27 gene(s)	inside rSNPs	diseases
5	nsv538141	chr6:15234675-15509163	Enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	28 gene(s)	inside rSNPs	diseases
6	nsv538142	chr6:15243960-15404893	Weak transcription Enhancers Flanking Active TSS Genic enhancers Active TSS Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	27 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:121 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:15249600-15256200	Weak transcription	Lung	lung
2	chr6:15249800-15256200	Weak transcription	Ovary	ovary
3	chr6:15250000-15256200	Weak transcription	Aorta	Aorta
4	chr6:15250000-15256200	Weak transcription	Placenta Amnion	Placenta Amnion
5	chr6:15250000-15256800	Weak transcription	Rectal Smooth Muscle	rectum
6	chr6:15250000-15262000	Enhancers	Primary T killer naive cells fromperipheralblood	blood
7	chr6:15250200-15256000	Enhancers	Primary hematopoietic stem cells	blood
8	chr6:15250200-15259200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
9	chr6:15250400-15255800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
10	chr6:15250400-15256600	Weak transcription	Muscle Satellite Cultured Cells	--
11	chr6:15250400-15257000	Enhancers	Thymus	Thymus
12	chr6:15250400-15257000	Enhancers	Dnd41	blood
13	chr6:15250400-15258600	Enhancers	Primary T killer memory cells from peripheral blood	blood
14	chr6:15250400-15259200	Weak transcription	HMEC	breast
15	chr6:15250600-15255800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
16	chr6:15250800-15256400	Enhancers	Primary monocytes fromperipheralblood	blood
17	chr6:15251000-15256000	Weak transcription	Fetal Brain Female	brain
18	chr6:15251000-15257000	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
19	chr6:15251200-15279400	Weak transcription	A549	lung
20	chr6:15251400-15256200	Weak transcription	Stomach Smooth Muscle	stomach
21	chr6:15251400-15257400	Enhancers	Primary B cells from peripheral blood	blood
22	chr6:15251800-15255800	Weak transcription	Right Ventricle	heart
23	chr6:15251800-15256000	Weak transcription	Fetal Kidney	kidney
24	chr6:15251800-15256200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
25	chr6:15252200-15257000	Flanking Active TSS	GM12878-XiMat	blood
26	chr6:15252400-15256200	Enhancers	Fetal Heart	heart
27	chr6:15252400-15260000	Genic enhancers	Fetal Thymus	thymus
28	chr6:15252600-15257200	Enhancers	Small Intestine	intestine
29	chr6:15252800-15255800	Enhancers	Duodenum Mucosa	Duodenum
30	chr6:15252800-15256000	Weak transcription	Duodenum Smooth Muscle	Duodenum
31	chr6:15252800-15256000	Weak transcription	Rectal Mucosa Donor 29	rectum
32	chr6:15253200-15255800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
33	chr6:15253200-15256200	Enhancers	Spleen	Spleen
34	chr6:15253200-15262000	Enhancers	Primary T helper naive cells fromperipheralblood	blood
35	chr6:15253200-15262200	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
36	chr6:15253200-15269600	Enhancers	Primary T helper cells fromperipheralblood	blood
37	chr6:15253400-15257400	Enhancers	Primary neutrophils fromperipheralblood	blood
38	chr6:15253600-15257000	Enhancers	Primary T cells fromperipheralblood	blood
39	chr6:15253600-15261600	Enhancers	Skeletal Muscle Male	skeletal muscle
40	chr6:15253600-15262200	Enhancers	Skeletal Muscle Female	skeletal muscle
41	chr6:15253800-15256000	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
42	chr6:15253800-15256400	Genic enhancers	iPS-20b Cell Line	embryonic stem cell
43	chr6:15253800-15257000	Enhancers	Sigmoid Colon	Sigmoid Colon
44	chr6:15253800-15258400	Genic enhancers	HUES64 Cell Line	embryonic stem cell
45	chr6:15253800-15261600	Enhancers	Brain Anterior Caudate	brain
46	chr6:15253800-15262000	Enhancers	Brain Cingulate Gyrus	brain
47	chr6:15254000-15256000	Genic enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
48	chr6:15254000-15257000	Enhancers	Left Ventricle	heart
49	chr6:15254000-15257000	Enhancers	Psoas Muscle	Psoas
50	chr6:15254000-15258200	Genic enhancers	K562	blood

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links