Variant report

Variant	rs13210652
Chromosome Location	chr6:15205208-15205209
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:15199227..15201551-chr6:15204261..15206100,2	K562	blood:
2	chr6:15204824..15206496-chr6:15384715..15386653,2	K562	blood:

Extended variants
information (count: 62 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:59)

rs_ID	r²[population]
rs13191127	0.92[EUR][1000 genomes]
rs13197919	0.80[EUR][1000 genomes]
rs13198600	0.84[EUR][1000 genomes]
rs13206138	0.92[EUR][1000 genomes]
rs13206695	0.85[EUR][1000 genomes]
rs13209122	1.00[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs13209721	0.92[EUR][1000 genomes]
rs13213534	1.00[AFR][1000 genomes];0.83[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs13215638	0.85[EUR][1000 genomes]
rs13216551	0.92[EUR][1000 genomes]
rs13216625	0.85[EUR][1000 genomes]
rs13219748	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs34048058	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs34144528	0.80[EUR][1000 genomes]
rs34156913	0.84[EUR][1000 genomes]
rs34229995	0.84[EUR][1000 genomes]
rs34340185	0.80[EUR][1000 genomes]
rs34390534	1.00[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs34470245	0.92[EUR][1000 genomes]
rs34488826	0.84[EUR][1000 genomes]
rs34677259	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs34790337	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs34816087	0.92[EUR][1000 genomes]
rs34816488	0.92[EUR][1000 genomes]
rs34934295	0.92[EUR][1000 genomes]
rs35147300	0.84[EUR][1000 genomes]
rs35378362	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs35659244	0.85[EUR][1000 genomes]
rs35660009	1.00[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs35981238	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs36058592	1.00[AMR][1000 genomes]
rs67845400	0.85[EUR][1000 genomes]
rs71533639	0.92[EUR][1000 genomes]
rs71533640	0.92[EUR][1000 genomes]
rs71533642	0.92[EUR][1000 genomes]
rs71551025	0.92[EUR][1000 genomes]
rs71551028	0.92[EUR][1000 genomes]
rs71551030	0.92[EUR][1000 genomes]
rs71551032	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs71551033	0.92[EUR][1000 genomes]
rs71551034	0.92[EUR][1000 genomes]
rs71551035	1.00[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs71551040	0.84[EUR][1000 genomes]
rs71551041	0.84[EUR][1000 genomes]
rs71551042	0.80[EUR][1000 genomes]
rs71551043	0.80[EUR][1000 genomes]
rs71551045	0.80[EUR][1000 genomes]
rs71551046	0.80[EUR][1000 genomes]
rs7740407	0.92[EUR][1000 genomes]
rs9383028	0.85[EUR][1000 genomes]
rs9476760	0.85[EUR][1000 genomes]
rs9476761	0.85[EUR][1000 genomes]
rs9476782	0.92[EUR][1000 genomes]
rs9476783	0.92[EUR][1000 genomes]
rs9476784	0.92[EUR][1000 genomes]
rs9476793	0.92[EUR][1000 genomes]
rs9476794	0.92[EUR][1000 genomes]
rs9476797	1.00[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs9476798	1.00[AMR][1000 genomes];0.92[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830593	chr6:15049636-15244190	Enhancers Weak transcription Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
2	nsv830594	chr6:15171158-15261296	Flanking Active TSS Enhancers Weak transcription Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	22 gene(s)	inside rSNPs	diseases
3	nsv1027010	chr6:15201803-15425629	Flanking Active TSS Enhancers Weak transcription Active TSS Genic enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	27 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:15200600-15206600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
2	chr6:15202400-15205400	Weak transcription	H1 Cell Line	embryonic stem cell
3	chr6:15202400-15207400	Weak transcription	HUES64 Cell Line	embryonic stem cell
4	chr6:15205200-15205400	Enhancers	H9 Cell Line	embryonic stem cell
5	chr6:15205200-15205800	Enhancers	HUES6 Cell Line	embryonic stem cell
6	chr6:15205200-15206600	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
7	chr6:15205200-15206800	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
8	chr6:15205200-15207600	Enhancers	ES-I3 Cell Line	embryonic stem cell

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