Variant report

Variant	rs962007
Chromosome Location	chr5:116769160-116769161
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 95 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:93)

rs_ID	r²[population]
rs10035911	0.90[ASN][1000 genomes]
rs10071916	0.90[ASN][1000 genomes]
rs10079714	0.81[ASN][1000 genomes]
rs10477562	0.90[ASN][1000 genomes]
rs10478348	0.90[ASN][1000 genomes]
rs10478349	0.90[ASN][1000 genomes]
rs10478350	0.90[ASN][1000 genomes]
rs13164296	0.83[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13164536	0.83[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13165072	0.89[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs13175962	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs13176313	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs13176472	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs13176885	0.88[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs13177703	1.00[JPT][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13180710	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs13180714	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs13184765	0.88[EUR][1000 genomes]
rs13354532	0.90[ASN][1000 genomes]
rs13355712	0.81[ASN][1000 genomes]
rs1366184	0.88[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17141717	1.00[CEU][hapmap];0.88[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17398971	0.88[EUR][1000 genomes]
rs17839480	0.84[EUR][1000 genomes]
rs1820667	0.88[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2560627	0.90[ASN][1000 genomes]
rs2657043	0.83[ASN][1000 genomes]
rs267059	0.83[ASN][1000 genomes]
rs267060	0.83[ASN][1000 genomes]
rs28454754	0.81[ASN][1000 genomes]
rs34360904	0.84[EUR][1000 genomes]
rs34374339	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35183133	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35515870	0.84[EUR][1000 genomes]
rs35753719	0.88[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs365600	0.83[ASN][1000 genomes]
rs366335	0.83[ASN][1000 genomes]
rs369130	0.83[ASN][1000 genomes]
rs374057	0.83[ASN][1000 genomes]
rs378387	0.83[ASN][1000 genomes]
rs386139	0.83[ASN][1000 genomes]
rs387069	0.83[ASN][1000 genomes]
rs388253	0.83[ASN][1000 genomes]
rs388643	0.83[ASN][1000 genomes]
rs390818	0.83[ASN][1000 genomes]
rs392437	0.83[ASN][1000 genomes]
rs398793	0.83[ASN][1000 genomes]
rs400845	0.83[ASN][1000 genomes]
rs401607	0.83[ASN][1000 genomes]
rs402131	0.83[ASN][1000 genomes]
rs402578	0.83[ASN][1000 genomes]
rs408218	0.83[ASN][1000 genomes]
rs410212	0.83[ASN][1000 genomes]
rs411705	0.83[ASN][1000 genomes]
rs412087	0.83[ASN][1000 genomes]
rs4133428	0.90[ASN][1000 genomes]
rs428812	0.83[ASN][1000 genomes]
rs435028	0.83[ASN][1000 genomes]
rs445048	0.83[ASN][1000 genomes]
rs55788310	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55912291	0.83[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56222571	0.81[ASN][1000 genomes]
rs611501	0.83[ASN][1000 genomes]
rs612365	0.83[ASN][1000 genomes]
rs62378254	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs62378255	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs62378256	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs62378257	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs62378258	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs62380061	0.85[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62380371	0.90[ASN][1000 genomes]
rs62380373	0.90[ASN][1000 genomes]
rs62380374	0.90[ASN][1000 genomes]
rs62380375	0.90[ASN][1000 genomes]
rs62380378	0.90[ASN][1000 genomes]
rs62380379	0.90[ASN][1000 genomes]
rs62380380	0.90[ASN][1000 genomes]
rs62380381	0.90[ASN][1000 genomes]
rs62380382	0.90[ASN][1000 genomes]
rs62380383	0.90[ASN][1000 genomes]
rs62380384	0.90[ASN][1000 genomes]
rs62380385	0.90[ASN][1000 genomes]
rs62380386	0.90[ASN][1000 genomes]
rs66497971	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs67546109	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6861435	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6867203	1.00[CEU][hapmap]
rs6887390	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6899129	0.83[ASN][1000 genomes]
rs72812601	0.90[ASN][1000 genomes]
rs72814413	0.90[ASN][1000 genomes]
rs72814414	0.90[ASN][1000 genomes]
rs962006	0.86[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830457	chr5:116724777-116875060	Active TSS Flanking Active TSS Enhancers Weak transcription Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv599487	chr5:116732456-116772093	Enhancers Weak transcription Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:116766800-116769600	Weak transcription	Stomach Smooth Muscle	stomach
2	chr5:116767400-116769400	Weak transcription	Rectal Smooth Muscle	rectum
3	chr5:116769000-116770400	Enhancers	Fetal Stomach	stomach
4	chr5:116769000-116772200	Enhancers	Colon Smooth Muscle	Colon

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links