Variant report

Variant	rs976083
Chromosome Location	chr6:46064645-46064646
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 35 )
Associated
traits (count: 10 )

rSNPs within LD-proxies of this variant (count:35)

rs_ID	r²[population]
rs1047153	0.81[CEU][hapmap];0.86[GIH][hapmap]
rs1048076	0.85[CEU][hapmap];0.88[CHD][hapmap];0.89[GIH][hapmap]
rs1048077	0.81[CEU][hapmap]
rs1076738	0.81[GIH][hapmap]
rs10807334	0.85[ASN][1000 genomes]
rs11754760	0.85[ASN][1000 genomes]
rs12196107	0.85[CEU][hapmap];0.81[CHB][hapmap]
rs13210366	0.85[ASN][1000 genomes]
rs13210417	0.85[AFR][1000 genomes]
rs14781	0.85[CEU][hapmap];0.88[CHD][hapmap];0.83[GIH][hapmap]
rs2143747	0.85[CEU][hapmap];0.88[CHD][hapmap];0.91[GIH][hapmap]
rs2179760	0.85[CEU][hapmap];0.88[CHD][hapmap];0.91[GIH][hapmap]
rs3756802	0.85[CEU][hapmap]
rs3806995	0.85[CEU][hapmap];0.88[CHD][hapmap];0.86[GIH][hapmap]
rs5011271	0.82[ASW][hapmap];0.81[CEU][hapmap];0.81[GIH][hapmap]
rs6458491	0.85[CEU][hapmap];0.88[CHD][hapmap];0.91[GIH][hapmap]
rs6921826	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6926570	0.85[CEU][hapmap];0.88[CHD][hapmap];0.83[GIH][hapmap]
rs6930766	0.85[CEU][hapmap];0.88[CHD][hapmap];0.83[GIH][hapmap]
rs7357078	0.85[CEU][hapmap];0.88[CHD][hapmap];0.89[GIH][hapmap]
rs7754582	0.85[ASN][1000 genomes]
rs7766019	0.81[CEU][hapmap];0.90[YRI][hapmap];0.81[AFR][1000 genomes]
rs7769738	0.85[CEU][hapmap]
rs7770384	0.85[CEU][hapmap]
rs7775082	0.85[CEU][hapmap];0.88[CHD][hapmap];0.91[GIH][hapmap]
rs8180644	0.80[ASN][1000 genomes]
rs910179	0.85[CEU][hapmap];0.84[CHD][hapmap];0.86[GIH][hapmap]
rs9357500	0.85[CEU][hapmap]
rs9367233	0.85[ASN][1000 genomes]
rs9369597	0.80[CEU][hapmap]
rs9369600	0.85[CEU][hapmap]
rs9381430	0.85[CEU][hapmap]
rs9395156	0.81[CEU][hapmap];0.90[GIH][hapmap]
rs995563	0.81[CEU][hapmap]
rs995564	0.85[CEU][hapmap];0.82[CHB][hapmap];0.88[CHD][hapmap];0.91[GIH][hapmap];0.80[ASN][1000 genomes]

mRNA abundance (count:10)

SNP	Gene	Cis/trans	Tissue	Source
rs976083	ENPP5	cis	parietal	SCAN
rs976083	ZNF318	cis	parietal	SCAN
rs976083	PPP2R5D	cis	cerebellum	SCAN
rs976083	RHAG	cis	cerebellum	SCAN
rs976083	ENPP4	cis	cerebellum	SCAN
rs976083	CLIC5	cis	parietal	SCAN
rs976083	ENPP5	cis	cerebellum	SCAN
rs976083	MBOAT4	trans	cerebellum	SCAN
rs976083	ENPP5	cis	Thyroid	GTEx
rs976083	ENPP4	cis	parietal	SCAN

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:46062600-46066400	Weak transcription	Psoas Muscle	Psoas
2	chr6:46062800-46068800	Weak transcription	Primary T killer memory cells from peripheral blood	blood
3	chr6:46062800-46071200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
4	chr6:46063000-46066400	Weak transcription	Fetal Muscle Trunk	muscle
5	chr6:46063000-46080800	Weak transcription	Primary T cells from cord blood	blood
6	chr6:46063200-46066400	Weak transcription	Skeletal Muscle Male	skeletal muscle
7	chr6:46063200-46071400	Weak transcription	Primary T cells fromperipheralblood	blood
8	chr6:46063800-46065600	Strong transcription	Skeletal Muscle Female	skeletal muscle
9	chr6:46064000-46066400	Weak transcription	Brain Cingulate Gyrus	brain
10	chr6:46064200-46065200	Weak transcription	Brain Angular Gyrus	brain
11	chr6:46064200-46066200	Weak transcription	Brain Inferior Temporal Lobe	brain
12	chr6:46064200-46068600	Weak transcription	Primary neutrophils fromperipheralblood	blood
13	chr6:46064400-46066200	Weak transcription	Rectal Mucosa Donor 31	rectum
14	chr6:46064400-46066600	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
15	chr6:46064400-46072800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
16	chr6:46064600-46064800	Weak transcription	Primary B cells from cord blood	blood
17	chr6:46064600-46066400	Weak transcription	Fetal Muscle Leg	muscle
18	chr6:46064600-46069400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
19	chr6:46064600-46071400	Weak transcription	Primary hematopoietic stem cells	blood

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