Variant report

Variant	rs10052497
Chromosome Location	chr5:79685303-79685304
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr5:79684949..79686674-chr5:79697714..79700517,2	K562	blood:

Extended variants
information (count: 47 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:44)

rs_ID	r²[population]
rs10433	0.81[EUR][1000 genomes]
rs1097307	0.86[EUR][1000 genomes]
rs1097308	0.86[EUR][1000 genomes]
rs1097309	0.86[EUR][1000 genomes]
rs1103116	0.83[EUR][1000 genomes]
rs1363775	0.81[EUR][1000 genomes]
rs16877760	0.83[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs168938	0.86[EUR][1000 genomes]
rs168939	0.82[EUR][1000 genomes]
rs171821	0.91[EUR][1000 genomes]
rs174075	0.82[EUR][1000 genomes]
rs1820119	0.83[EUR][1000 genomes]
rs185100	0.82[EUR][1000 genomes]
rs187479	0.81[EUR][1000 genomes]
rs192313	0.85[EUR][1000 genomes]
rs2112152	0.80[EUR][1000 genomes]
rs249021	0.81[EUR][1000 genomes]
rs249025	0.81[EUR][1000 genomes]
rs249027	0.81[EUR][1000 genomes]
rs249028	0.81[EUR][1000 genomes]
rs249029	0.81[EUR][1000 genomes]
rs249031	0.81[EUR][1000 genomes]
rs249037	0.81[EUR][1000 genomes]
rs249039	0.81[EUR][1000 genomes]
rs2544592	0.86[EUR][1000 genomes]
rs2544593	0.86[EUR][1000 genomes]
rs2544598	0.83[EUR][1000 genomes]
rs2544599	0.83[EUR][1000 genomes]
rs2544600	0.82[EUR][1000 genomes]
rs2544603	0.81[EUR][1000 genomes]
rs2547487	0.86[EUR][1000 genomes]
rs2547497	0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs259025	0.86[EUR][1000 genomes]
rs259031	0.83[EUR][1000 genomes]
rs259033	0.83[EUR][1000 genomes]
rs259034	0.81[EUR][1000 genomes]
rs259035	0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs259041	0.90[EUR][1000 genomes]
rs259043	0.91[EUR][1000 genomes]
rs259055	0.88[EUR][1000 genomes]
rs3095851	0.82[EUR][1000 genomes]
rs3096111	0.80[EUR][1000 genomes]
rs401612	0.81[EUR][1000 genomes]
rs969567	0.83[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv948807	chr5:79549207-79805765	Genic enhancers Enhancers Flanking Active TSS Weak transcription Strong transcription Active TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	49 gene(s)	inside rSNPs	diseases
2	nsv518480	chr5:79586085-79748382	Enhancers Strong transcription Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	26 gene(s)	inside rSNPs	diseases
3	nsv965552	chr5:79680761-79686085	Weak transcription Flanking Active TSS Active TSS Enhancers Flanking Bivalent TSS/Enh	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:79681200-79685400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr5:79685000-79685400	Active TSS	Primary hematopoietic stem cells	blood
3	chr5:79685000-79685600	Enhancers	Primary hematopoietic stem cells short term culture	blood
4	chr5:79685000-79685600	Active TSS	Rectal Mucosa Donor 29	rectum
5	chr5:79685000-79685800	Enhancers	Primary monocytes fromperipheralblood	blood
6	chr5:79685000-79685800	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
7	chr5:79685000-79685800	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
8	chr5:79685200-79685400	Enhancers	H9 Cell Line	embryonic stem cell
9	chr5:79685200-79685600	Active TSS	Primary B cells from cord blood	blood
10	chr5:79685200-79685600	Enhancers	Primary B cells from peripheral blood	blood
11	chr5:79685200-79685600	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Female	--
12	chr5:79685200-79685600	Active TSS	Brain Hippocampus Middle	brain
13	chr5:79685200-79685800	Flanking Active TSS	Primary neutrophils fromperipheralblood	blood

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