The 2.0 version of rSNPBase

Variant report

Variant rs401612
Chromosome Location chr5:79765681-79765682
allele C/T
Outlinks Ensembl   UCSC
Chromatin state (count:113 , 50 per page) page: 1 2 3
No. Chromosome Location Chromatin state Cell line Tissue
1 chr5:79731400-79768000 Weak transcription Primary T helper memory cells from peripheral blood 1 blood
2 chr5:79732200-79766200 Weak transcription Primary T helper memory cells from peripheral blood 2 blood
3 chr5:79733400-79782600 Weak transcription NHLF lung
4 chr5:79744800-79783200 Weak transcription Colonic Mucosa Colon
5 chr5:79751800-79766400 Strong transcription Duodenum Smooth Muscle Duodenum
6 chr5:79753400-79769600 Weak transcription HUVEC blood vessel
7 chr5:79754600-79769600 Weak transcription Osteobl bone
8 chr5:79755600-79768000 Strong transcription hESC Derived CD56+ Ectoderm Cultured Cells ES cell derived
9 chr5:79757000-79770000 Weak transcription NHDF-Ad bronchial
10 chr5:79757400-79769400 ZNF genes & repeats Primary hematopoietic stem cells G-CSF-mobilized Male --
11 chr5:79758400-79766400 Weak transcription Colon Smooth Muscle Colon
12 chr5:79758600-79766200 Weak transcription Primary T cells effector/memory enriched fromperipheralblood blood
13 chr5:79759200-79766000 Strong transcription Stomach Smooth Muscle stomach
14 chr5:79759400-79765800 Strong transcription Primary Natural Killer cells fromperipheralblood blood
15 chr5:79759400-79766000 Weak transcription Fetal Thymus thymus
16 chr5:79759400-79766000 Weak transcription Placenta Amnion Placenta Amnion
17 chr5:79759400-79766400 Weak transcription Primary T killer naive cells fromperipheralblood blood
18 chr5:79759400-79767800 Weak transcription Primary T killer memory cells from peripheral blood blood
19 chr5:79759400-79768800 Weak transcription NH-A brain
20 chr5:79759400-79775000 Weak transcription Hela-S3 cervix
21 chr5:79759400-79778800 Weak transcription Small Intestine intestine
22 chr5:79759400-79779200 Weak transcription Lung lung
23 chr5:79759400-79782800 Weak transcription Brain Dorsolateral Prefrontal Cortex brain
24 chr5:79759600-79766200 Weak transcription H1 Cell Line embryonic stem cell
25 chr5:79760200-79766800 Strong transcription Liver Liver
26 chr5:79760400-79766200 Weak transcription Foreskin Melanocyte Primary Cells skin01 Skin
27 chr5:79761800-79766000 Weak transcription Primary T regulatory cells fromperipheralblood blood
28 chr5:79762400-79765800 Strong transcription HSMM muscle
29 chr5:79762600-79769200 Weak transcription Primary T helper cells fromperipheralblood blood
30 chr5:79762800-79766200 Weak transcription A549 lung
31 chr5:79763000-79769800 Weak transcription Mesenchymal Stem Cell Derived Adipocyte Cultured Cells ES cell derived
32 chr5:79763200-79765800 Strong transcription Duodenum Mucosa Duodenum
33 chr5:79763200-79766200 Strong transcription Foreskin Melanocyte Primary Cells skin03 Skin
34 chr5:79763200-79766200 Weak transcription Fetal Muscle Trunk muscle
35 chr5:79763200-79767400 Weak transcription Aorta Aorta
36 chr5:79763200-79772400 Weak transcription ES-WA7 Cell Line embryonic stem cell
37 chr5:79763200-79779600 Weak transcription Gastric stomach
38 chr5:79763400-79766200 Weak transcription Rectal Smooth Muscle rectum
39 chr5:79763400-79775200 Weak transcription iPS-15b Cell Line embryonic stem cell
40 chr5:79763600-79767400 Weak transcription HSMMtube muscle
41 chr5:79763800-79766200 Weak transcription Foreskin Keratinocyte Primary Cells skin02 Skin
42 chr5:79763800-79766200 Weak transcription Foreskin Keratinocyte Primary Cells skin03 Skin
43 chr5:79764000-79766400 Strong transcription Rectal Mucosa Donor 29 rectum
44 chr5:79764000-79767800 ZNF genes & repeats hESC Derived CD56+ Mesoderm Cultured Cells ES cell derived
45 chr5:79764000-79768200 ZNF genes & repeats hESC Derived CD184+ Endoderm Cultured Cells ES cell derived
46 chr5:79764000-79771400 Strong transcription Brain Angular Gyrus brain
47 chr5:79764200-79766600 ZNF genes & repeats Fetal Lung lung
48 chr5:79764200-79768000 ZNF genes & repeats H9 Derived Neuronal Progenitor Cultured Cells ES cell derived
49 chr5:79764200-79775200 Weak transcription HMEC breast
50 chr5:79764400-79766200 Weak transcription Brain Substantia Nigra brain

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Last update: Aug 31, 2015