The 2.0 version of rSNPBase

Variant report

Variant rs259034
Chromosome Location chr5:79741018-79741019
allele A/T
Outlinks Ensembl   UCSC
Chromatin state (count:123 , 50 per page) page: 1 2 3
No. Chromosome Location Chromatin state Cell line Tissue
1 chr5:79704600-79758000 Weak transcription Spleen Spleen
2 chr5:79704600-79758600 Weak transcription Gastric stomach
3 chr5:79705600-79757400 Weak transcription H9 Cell Line embryonic stem cell
4 chr5:79720400-79743200 Weak transcription Primary T helper naive cells from peripheral blood blood
5 chr5:79722600-79765400 Weak transcription Fetal Brain Male brain
6 chr5:79724200-79757400 Weak transcription H1 Derived Neuronal Progenitor Cultured Cells ES cell derived
7 chr5:79726800-79741800 Weak transcription ES-I3 Cell Line embryonic stem cell
8 chr5:79729800-79752800 Strong transcription H9 Derived Neuronal Progenitor Cultured Cells ES cell derived
9 chr5:79730000-79750600 Strong transcription H9 Derived Neuron Cultured Cells ES cell derived
10 chr5:79730000-79756400 Strong transcription hESC Derived CD56+ Mesoderm Cultured Cells ES cell derived
11 chr5:79730000-79757000 Strong transcription Monocytes-CD14+_RO01746 blood
12 chr5:79730200-79750000 Strong transcription Primary Natural Killer cells fromperipheralblood blood
13 chr5:79730200-79751800 Weak transcription Primary T killer naive cells fromperipheralblood blood
14 chr5:79730200-79761400 Strong transcription Foreskin Melanocyte Primary Cells skin03 Skin
15 chr5:79730200-79762200 Weak transcription Stomach Mucosa stomach
16 chr5:79730600-79757200 Weak transcription Foreskin Fibroblast Primary Cells skin02 Skin
17 chr5:79730600-79762200 Weak transcription ES-WA7 Cell Line embryonic stem cell
18 chr5:79731200-79749400 Strong transcription Adipose Derived Mesenchymal Stem Cell Cultured Cells ES cell derived
19 chr5:79731400-79748000 Strong transcription Mesenchymal Stem Cell Derived Adipocyte Cultured Cells ES cell derived
20 chr5:79731400-79768000 Weak transcription Primary T helper memory cells from peripheral blood 1 blood
21 chr5:79731600-79741600 Strong transcription iPS-20b Cell Line embryonic stem cell
22 chr5:79731600-79750000 Strong transcription Primary monocytes fromperipheralblood blood
23 chr5:79731600-79758400 Weak transcription Primary T killer memory cells from peripheral blood blood
24 chr5:79731800-79747000 Strong transcription Breast Myoepithelial Primary Cells Breast
25 chr5:79732200-79741400 Weak transcription H1 BMP4 Derived Trophoblast Cultured Cells ES cell derived
26 chr5:79732200-79746600 Weak transcription Pancreas Pancrea
27 chr5:79732200-79757400 Weak transcription H1 Derived Mesenchymal Stem Cells ES cell derived
28 chr5:79732200-79757800 Weak transcription NHEK skin
29 chr5:79732200-79758600 Weak transcription Esophagus oesophagus
30 chr5:79732200-79766200 Weak transcription Primary T helper memory cells from peripheral blood 2 blood
31 chr5:79732400-79743000 Weak transcription iPS DF 6.9 Cell Line embryonic stem cell
32 chr5:79732400-79758200 Weak transcription Small Intestine intestine
33 chr5:79732800-79742600 Weak transcription Primary T cells effector/memory enriched fromperipheralblood blood
34 chr5:79733000-79743400 Weak transcription Primary hematopoietic stem cells blood
35 chr5:79733000-79743800 Weak transcription Brain Dorsolateral Prefrontal Cortex brain
36 chr5:79733000-79747400 Weak transcription Foreskin Fibroblast Primary Cells skin01 Skin
37 chr5:79733400-79782600 Weak transcription NHLF lung
38 chr5:79733600-79757200 Weak transcription Placenta Amnion Placenta Amnion
39 chr5:79733800-79755000 Weak transcription Primary T helper naive cells fromperipheralblood blood
40 chr5:79734600-79742800 Weak transcription Fetal Brain Female brain
41 chr5:79735000-79751800 Weak transcription Brain Angular Gyrus brain
42 chr5:79735000-79758600 Weak transcription K562 blood
43 chr5:79736000-79745600 Strong transcription Fetal Intestine Large intestine
44 chr5:79736200-79743200 Weak transcription HepG2 liver
45 chr5:79736400-79743200 Weak transcription GM12878-XiMat blood
46 chr5:79736400-79757400 Weak transcription Pancreatic Islets Pancreatic Islet
47 chr5:79736400-79759600 Strong transcription Primary neutrophils fromperipheralblood blood
48 chr5:79736600-79741400 Strong transcription Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
49 chr5:79736800-79747000 Strong transcription Fetal Muscle Trunk muscle
50 chr5:79737000-79752600 Weak transcription Psoas Muscle Psoas

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Last update: Aug 31, 2015