Variant report

Variant	rs2547497
Chromosome Location	chr5:79693679-79693680
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr5:79692955..79695721-chr5:79761106..79763084,2	MCF-7	breast:
2	chr5:79691909..79693908-chr5:79702034..79703785,2	MCF-7	breast:

Extended variants
information (count: 56 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:54)

rs_ID	r²[population]
rs10052497	0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10433	0.83[EUR][1000 genomes]
rs1097307	0.88[EUR][1000 genomes]
rs1097308	0.88[EUR][1000 genomes]
rs1097309	0.82[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs1102116	0.82[EUR][1000 genomes]
rs1103116	0.86[EUR][1000 genomes]
rs1363775	0.83[EUR][1000 genomes]
rs16877760	0.83[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs168938	0.88[EUR][1000 genomes]
rs168939	0.85[EUR][1000 genomes]
rs171821	0.93[EUR][1000 genomes]
rs174075	0.85[EUR][1000 genomes]
rs1820119	0.86[EUR][1000 genomes]
rs185100	0.82[EUR][1000 genomes]
rs187479	0.83[EUR][1000 genomes]
rs192313	0.87[EUR][1000 genomes]
rs2112152	0.82[EUR][1000 genomes]
rs249021	0.83[EUR][1000 genomes]
rs249024	0.82[EUR][1000 genomes]
rs249025	0.83[EUR][1000 genomes]
rs249026	0.81[EUR][1000 genomes]
rs249027	0.83[EUR][1000 genomes]
rs249028	0.83[EUR][1000 genomes]
rs249029	0.83[EUR][1000 genomes]
rs249031	0.83[EUR][1000 genomes]
rs249037	0.83[EUR][1000 genomes]
rs249039	0.83[EUR][1000 genomes]
rs2544592	0.88[EUR][1000 genomes]
rs2544593	0.88[EUR][1000 genomes]
rs2544598	0.86[EUR][1000 genomes]
rs2544599	0.86[EUR][1000 genomes]
rs2544600	0.84[EUR][1000 genomes]
rs2544603	0.83[EUR][1000 genomes]
rs2547487	0.88[EUR][1000 genomes]
rs259025	0.88[EUR][1000 genomes]
rs259031	0.86[EUR][1000 genomes]
rs259033	0.86[EUR][1000 genomes]
rs259034	0.83[EUR][1000 genomes]
rs259035	0.86[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs259041	0.92[EUR][1000 genomes]
rs259043	0.83[AFR][1000 genomes];0.93[EUR][1000 genomes]
rs259055	0.91[EUR][1000 genomes]
rs2599508	0.82[EUR][1000 genomes]
rs3095851	0.85[EUR][1000 genomes]
rs3096111	0.82[EUR][1000 genomes]
rs394076	0.82[EUR][1000 genomes]
rs394170	0.82[EUR][1000 genomes]
rs399261	0.82[EUR][1000 genomes]
rs401612	0.83[EUR][1000 genomes]
rs408899	0.82[EUR][1000 genomes]
rs701380	0.82[EUR][1000 genomes]
rs863163	0.82[EUR][1000 genomes]
rs969567	0.86[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv948807	chr5:79549207-79805765	Genic enhancers Enhancers Flanking Active TSS Weak transcription Strong transcription Active TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	49 gene(s)	inside rSNPs	diseases
2	nsv518480	chr5:79586085-79748382	Enhancers Strong transcription Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	26 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:79693600-79696800	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin

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