The 2.0 version of rSNPBase

Variant report

Variant rs2544592
Chromosome Location chr5:79710426-79710427
allele A/G
Outlinks Ensembl   UCSC
Chromatin state (count:82 , 50 per page) page: 1 2
No. Chromosome Location Chromatin state Cell line Tissue
1 chr5:79704600-79710600 Weak transcription Small Intestine intestine
2 chr5:79704600-79717000 Weak transcription Primary Natural Killer cells fromperipheralblood blood
3 chr5:79704600-79723600 Weak transcription H1 Derived Neuronal Progenitor Cultured Cells ES cell derived
4 chr5:79704600-79730200 Weak transcription H1 Derived Mesenchymal Stem Cells ES cell derived
5 chr5:79704600-79730200 Weak transcription Lung lung
6 chr5:79704600-79758000 Weak transcription Spleen Spleen
7 chr5:79704600-79758600 Weak transcription Gastric stomach
8 chr5:79704800-79711200 Weak transcription Primary B cells from peripheral blood blood
9 chr5:79704800-79711200 Weak transcription Primary mononuclear cells fromperipheralblood Blood
10 chr5:79704800-79731600 Weak transcription Fetal Thymus thymus
11 chr5:79705600-79731200 Weak transcription Aorta Aorta
12 chr5:79705600-79757400 Weak transcription H9 Cell Line embryonic stem cell
13 chr5:79705800-79712200 Weak transcription HUES48 Cell Line embryonic stem cell
14 chr5:79705800-79712800 Weak transcription Brain Cingulate Gyrus brain
15 chr5:79705800-79713000 Weak transcription NHEK skin
16 chr5:79705800-79715000 Weak transcription hESC Derived CD56+ Ectoderm Cultured Cells ES cell derived
17 chr5:79705800-79715000 Weak transcription Fetal Intestine Small intestine
18 chr5:79705800-79723400 Weak transcription Foreskin Keratinocyte Primary Cells skin02 Skin
19 chr5:79705800-79730200 Weak transcription Foreskin Fibroblast Primary Cells skin02 Skin
20 chr5:79705800-79731400 Weak transcription Rectal Mucosa Donor 31 rectum
21 chr5:79705800-79731800 Weak transcription ES-UCSF4 Cell Line embryonic stem cell
22 chr5:79706000-79710800 Weak transcription Primary T killer naive cells fromperipheralblood blood
23 chr5:79706000-79710800 Weak transcription HUVEC blood vessel
24 chr5:79706000-79711600 Weak transcription Psoas Muscle Psoas
25 chr5:79706000-79712600 Weak transcription Fetal Intestine Large intestine
26 chr5:79706000-79717800 Weak transcription Fetal Brain Female brain
27 chr5:79706000-79718000 Weak transcription Duodenum Mucosa Duodenum
28 chr5:79706000-79731400 Weak transcription Rectal Mucosa Donor 29 rectum
29 chr5:79706000-79731800 Weak transcription Foreskin Fibroblast Primary Cells skin01 Skin
30 chr5:79706000-79732000 Weak transcription Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
31 chr5:79706000-79732000 Weak transcription NHLF lung
32 chr5:79706200-79715600 Weak transcription Primary hematopoietic stem cells short term culture blood
33 chr5:79706200-79717400 Weak transcription Primary T cells from cord blood blood
34 chr5:79706200-79722000 Weak transcription Brain Germinal Matrix brain
35 chr5:79706200-79722200 Weak transcription Cortex derived primary cultured neurospheres brain
36 chr5:79706200-79731600 Weak transcription NHDF-Ad bronchial
37 chr5:79706400-79712000 Weak transcription Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells embryonic stem cell
38 chr5:79706400-79713000 Weak transcription Brain Hippocampus Middle brain
39 chr5:79706400-79717200 Weak transcription Mesenchymal Stem Cell Derived Adipocyte Cultured Cells ES cell derived
40 chr5:79706400-79720000 Weak transcription Fetal Lung lung
41 chr5:79706600-79711000 Weak transcription Fetal Adrenal Gland Adrenal Gland
42 chr5:79707800-79711800 Weak transcription Fetal Heart heart
43 chr5:79707800-79711800 Weak transcription K562 blood
44 chr5:79707800-79712800 Weak transcription HSMMtube muscle
45 chr5:79707800-79714800 Weak transcription Ganglion Eminence derived primary cultured neurospheres brain
46 chr5:79707800-79715200 Weak transcription Adipose Derived Mesenchymal Stem Cell Cultured Cells ES cell derived
47 chr5:79707800-79731600 Weak transcription iPS-20b Cell Line embryonic stem cell
48 chr5:79707800-79731800 Weak transcription Brain Angular Gyrus brain
49 chr5:79707800-79735400 Weak transcription Hela-S3 cervix
50 chr5:79708000-79712400 Weak transcription Brain Dorsolateral Prefrontal Cortex brain

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Last update: Aug 31, 2015