Variant report

Variant	rs6885891
Chromosome Location	chr5:79694317-79694318
allele	A/G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr5:79692955..79695721-chr5:79761106..79763084,2	MCF-7	breast:
2	chr5:79694018..79695713-chr5:79701443..79703273,2	MCF-7	breast:

Extended variants
information (count: 95 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:93)

rs_ID	r²[population]
rs10474621	0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10942926	0.81[AMR][1000 genomes];0.90[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs1097307	0.92[ASN][1000 genomes]
rs1097308	0.92[ASN][1000 genomes]
rs1097309	0.92[ASN][1000 genomes]
rs1103116	0.84[ASN][1000 genomes]
rs1104243	0.82[AFR][1000 genomes];0.86[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs13354660	0.86[AMR][1000 genomes];0.98[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs13359253	0.86[AMR][1000 genomes];0.98[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1363775	0.82[ASN][1000 genomes]
rs1423113	0.85[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16877755	0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs16877757	0.86[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs168938	0.92[ASN][1000 genomes]
rs168939	0.82[ASN][1000 genomes]
rs168940	0.82[AFR][1000 genomes];0.95[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs171595	0.82[EUR][1000 genomes]
rs171596	0.90[EUR][1000 genomes]
rs171821	0.97[ASN][1000 genomes]
rs173599	0.81[AMR][1000 genomes];0.90[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs174075	0.82[ASN][1000 genomes]
rs174076	0.89[AFR][1000 genomes];0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1820119	0.82[ASN][1000 genomes]
rs192313	0.89[ASN][1000 genomes]
rs194541	0.85[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2251759	0.81[AMR][1000 genomes];0.90[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs248999	0.86[EUR][1000 genomes]
rs249004	0.90[EUR][1000 genomes]
rs249006	0.90[EUR][1000 genomes]
rs249016	0.81[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs249023	0.86[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs249024	0.82[ASN][1000 genomes]
rs249025	0.82[ASN][1000 genomes]
rs249026	0.82[ASN][1000 genomes]
rs249027	0.82[ASN][1000 genomes]
rs249028	0.82[ASN][1000 genomes]
rs249030	0.90[EUR][1000 genomes]
rs249032	0.88[EUR][1000 genomes]
rs249038	0.81[AMR][1000 genomes];0.88[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs249039	0.82[ASN][1000 genomes]
rs2544591	0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2544592	0.92[ASN][1000 genomes]
rs2544593	0.92[ASN][1000 genomes]
rs2544598	0.82[ASN][1000 genomes]
rs2544599	0.82[ASN][1000 genomes]
rs2544600	0.82[ASN][1000 genomes]
rs2544603	0.82[ASN][1000 genomes]
rs2544604	0.81[AMR][1000 genomes];0.90[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs2547487	0.92[ASN][1000 genomes]
rs259023	0.86[AFR][1000 genomes];0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs259024	0.86[AFR][1000 genomes];0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs259025	0.92[ASN][1000 genomes]
rs259026	0.86[AFR][1000 genomes];0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs259027	0.86[AFR][1000 genomes];0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs259028	0.81[AMR][1000 genomes];0.94[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs259029	0.82[ASN][1000 genomes]
rs259030	0.94[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs259031	0.82[ASN][1000 genomes]
rs259032	0.90[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs259033	0.82[ASN][1000 genomes]
rs259034	0.82[ASN][1000 genomes]
rs259036	0.85[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs259037	0.82[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs259038	0.82[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs259039	0.97[ASN][1000 genomes]
rs259040	0.82[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs259041	0.97[ASN][1000 genomes]
rs259042	0.80[AFR][1000 genomes];0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs259043	0.97[ASN][1000 genomes]
rs259044	0.86[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs259045	0.86[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs259046	0.86[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs259047	0.86[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs259048	0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs259051	0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs259052	0.86[AMR][1000 genomes];0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs259053	0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs259054	0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs259055	0.92[ASN][1000 genomes]
rs28496723	0.80[AFR][1000 genomes];0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs28555465	0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs3095851	0.82[ASN][1000 genomes]
rs3096111	0.87[ASN][1000 genomes]
rs401612	0.82[ASN][1000 genomes]
rs4704674	0.81[AMR][1000 genomes];0.92[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs557346	0.90[EUR][1000 genomes]
rs6869519	0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6887302	0.82[AFR][1000 genomes];0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs835726	0.85[AFR][1000 genomes];0.94[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs835729	0.82[AFR][1000 genomes];0.90[AMR][1000 genomes];0.94[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs856765	0.81[AMR][1000 genomes];0.90[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs856772	0.90[EUR][1000 genomes]
rs969567	0.82[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv948807	chr5:79549207-79805765	Genic enhancers Enhancers Flanking Active TSS Weak transcription Strong transcription Active TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	49 gene(s)	inside rSNPs	diseases
2	nsv518480	chr5:79586085-79748382	Enhancers Strong transcription Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	26 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:79693600-79696800	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin

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