The 2.0 version of rSNPBase

Variant report

Variant rs168938
Chromosome Location chr5:79719852-79719853
allele C/T
Outlinks Ensembl   UCSC
Chromatin state (count:47 , 50 per page) page: 1
No. Chromosome Location Chromatin state Cell line Tissue
1 chr5:79704600-79723600 Weak transcription H1 Derived Neuronal Progenitor Cultured Cells ES cell derived
2 chr5:79704600-79730200 Weak transcription H1 Derived Mesenchymal Stem Cells ES cell derived
3 chr5:79704600-79730200 Weak transcription Lung lung
4 chr5:79704600-79758000 Weak transcription Spleen Spleen
5 chr5:79704600-79758600 Weak transcription Gastric stomach
6 chr5:79704800-79731600 Weak transcription Fetal Thymus thymus
7 chr5:79705600-79731200 Weak transcription Aorta Aorta
8 chr5:79705600-79757400 Weak transcription H9 Cell Line embryonic stem cell
9 chr5:79705800-79723400 Weak transcription Foreskin Keratinocyte Primary Cells skin02 Skin
10 chr5:79705800-79730200 Weak transcription Foreskin Fibroblast Primary Cells skin02 Skin
11 chr5:79705800-79731400 Weak transcription Rectal Mucosa Donor 31 rectum
12 chr5:79705800-79731800 Weak transcription ES-UCSF4 Cell Line embryonic stem cell
13 chr5:79706000-79731400 Weak transcription Rectal Mucosa Donor 29 rectum
14 chr5:79706000-79731800 Weak transcription Foreskin Fibroblast Primary Cells skin01 Skin
15 chr5:79706000-79732000 Weak transcription Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
16 chr5:79706000-79732000 Weak transcription NHLF lung
17 chr5:79706200-79722000 Weak transcription Brain Germinal Matrix brain
18 chr5:79706200-79722200 Weak transcription Cortex derived primary cultured neurospheres brain
19 chr5:79706200-79731600 Weak transcription NHDF-Ad bronchial
20 chr5:79706400-79720000 Weak transcription Fetal Lung lung
21 chr5:79707800-79731600 Weak transcription iPS-20b Cell Line embryonic stem cell
22 chr5:79707800-79731800 Weak transcription Brain Angular Gyrus brain
23 chr5:79707800-79735400 Weak transcription Hela-S3 cervix
24 chr5:79708000-79730200 Weak transcription Muscle Satellite Cultured Cells --
25 chr5:79708000-79730200 Weak transcription Liver Liver
26 chr5:79708000-79730200 Weak transcription Duodenum Smooth Muscle Duodenum
27 chr5:79708000-79731400 Weak transcription Adipose Nuclei Adipose
28 chr5:79708000-79731400 Weak transcription Left Ventricle heart
29 chr5:79708000-79731400 Weak transcription Ovary ovary
30 chr5:79708000-79731800 Weak transcription Brain Inferior Temporal Lobe brain
31 chr5:79708000-79738200 Weak transcription Skeletal Muscle Male skeletal muscle
32 chr5:79708000-79739200 Weak transcription Right Ventricle heart
33 chr5:79709000-79723400 Weak transcription H1 BMP4 Derived Trophoblast Cultured Cells ES cell derived
34 chr5:79710400-79731800 Weak transcription Skeletal Muscle Female skeletal muscle
35 chr5:79710400-79732000 Weak transcription A549 lung
36 chr5:79710600-79731400 Weak transcription Primary B cells from cord blood blood
37 chr5:79711000-79720000 Weak transcription Primary neutrophils fromperipheralblood blood
38 chr5:79713400-79731400 Weak transcription Brain Substantia Nigra brain
39 chr5:79715400-79722800 Weak transcription Foreskin Keratinocyte Primary Cells skin03 Skin
40 chr5:79715600-79730000 Weak transcription Foreskin Melanocyte Primary Cells skin01 Skin
41 chr5:79718200-79731800 Weak transcription NH-A brain
42 chr5:79718600-79722600 Weak transcription hESC Derived CD56+ Mesoderm Cultured Cells ES cell derived
43 chr5:79718600-79730200 Weak transcription IMR90 fetal lung fibroblasts Cell Line lung
44 chr5:79718800-79720000 Weak transcription Monocytes-CD14+_RO01746 blood
45 chr5:79718800-79723400 Weak transcription hESC Derived CD56+ Ectoderm Cultured Cells ES cell derived
46 chr5:79719600-79720800 Weak transcription Brain Dorsolateral Prefrontal Cortex brain
47 chr5:79719800-79730200 Weak transcription Foreskin Melanocyte Primary Cells skin03 Skin

Quick Search:


  
Input of quick search could be:

what's new

Quick links

Copyright © 2015, Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences. All Rights Reserved Feedback
Last update: Aug 31, 2015