Variant report

Variant	rs10131387
Chromosome Location	chr14:69123491-69123492
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:9)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:9 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr14:68937048..68939834-chr14:69120983..69124190,3	MCF-7	breast:
2	chr14:69120949..69124420-chr14:69255481..69258792,4	MCF-7	breast:
3	chr14:69117709..69119470-chr14:69122795..69124704,2	K562	blood:
4	chr14:69122320..69125331-chr14:69259876..69262362,3	MCF-7	breast:
5	chr14:69112688..69114597-chr14:69122344..69125074,2	K562	blood:
6	chr14:69030473..69032904-chr14:69122357..69124258,2	MCF-7	breast:
7	chr14:68740932..68744536-chr14:69121884..69124192,3	MCF-7	breast:
8	chr14:69122826..69132436-chr14:69256721..69264610,21	MCF-7	breast:
9	chr14:69122387..69124084-chr14:69250804..69252456,2	MCF-7	breast:

No data

Variant related genes	Relation type
ENSG00000182185	Chromatin interaction
ENSG00000185650	Chromatin interaction

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs10148735	1.00[ASN][1000 genomes]
rs17106102	1.00[JPT][hapmap]
rs1884811	1.00[JPT][hapmap]
rs2064825	1.00[JPT][hapmap]
rs2145155	1.00[JPT][hapmap]
rs2877497	1.00[YRI][hapmap];0.81[AFR][1000 genomes]
rs2877498	1.00[YRI][hapmap];0.81[AFR][1000 genomes]
rs4902623	1.00[JPT][hapmap]
rs4902624	1.00[JPT][hapmap]
rs6573846	1.00[JPT][hapmap]
rs6573847	1.00[JPT][hapmap]
rs6573848	1.00[JPT][hapmap]
rs7144613	1.00[JPT][hapmap]
rs7148690	1.00[JPT][hapmap]
rs7157140	1.00[JPT][hapmap]
rs761951	1.00[JPT][hapmap]
rs8009034	1.00[JPT][hapmap]
rs8010030	1.00[JPT][hapmap]
rs8010921	1.00[JPT][hapmap]
rs8016840	1.00[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1798800	chr14:69114353-69131030	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:78 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:69115400-69130200	Enhancers	Fetal Stomach	stomach
2	chr14:69116000-69123600	Enhancers	Ovary	ovary
3	chr14:69117000-69124000	Enhancers	Rectal Smooth Muscle	rectum
4	chr14:69119000-69125800	Weak transcription	HUES6 Cell Line	embryonic stem cell
5	chr14:69119600-69125400	Weak transcription	NHDF-Ad	bronchial
6	chr14:69120600-69123600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
7	chr14:69120800-69123600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
8	chr14:69120800-69123800	Enhancers	Breast Myoepithelial Primary Cells	Breast
9	chr14:69120800-69126800	Enhancers	Fetal Lung	lung
10	chr14:69120800-69127000	Enhancers	Fetal Thymus	thymus
11	chr14:69120800-69139800	Enhancers	Fetal Muscle Leg	muscle
12	chr14:69121000-69123600	Enhancers	Fetal Intestine Small	intestine
13	chr14:69121000-69123600	Enhancers	Placenta	Placenta
14	chr14:69121000-69123800	Enhancers	Brain Substantia Nigra	brain
15	chr14:69121000-69125800	Enhancers	Fetal Muscle Trunk	muscle
16	chr14:69121200-69123600	Enhancers	Cortex derived primary cultured neurospheres	brain
17	chr14:69121200-69123600	Enhancers	Fetal Intestine Large	intestine
18	chr14:69121200-69123800	Enhancers	Primary B cells from peripheral blood	blood
19	chr14:69121200-69129400	Enhancers	Placenta Amnion	Placenta Amnion
20	chr14:69121600-69124000	Enhancers	Primary hematopoietic stem cells short term culture	blood
21	chr14:69121800-69123600	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
22	chr14:69122000-69125000	Weak transcription	Gastric	stomach
23	chr14:69122000-69125800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
24	chr14:69122000-69127400	Weak transcription	GM12878-XiMat	blood
25	chr14:69122000-69136000	Weak transcription	Sigmoid Colon	Sigmoid Colon
26	chr14:69122200-69123600	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
27	chr14:69122200-69131200	Weak transcription	Small Intestine	intestine
28	chr14:69122400-69123800	Enhancers	Primary T cells from cord blood	blood
29	chr14:69122400-69125400	Weak transcription	NHLF	lung
30	chr14:69122600-69125400	Weak transcription	Muscle Satellite Cultured Cells	--
31	chr14:69122600-69125600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
32	chr14:69122600-69125600	Weak transcription	Colonic Mucosa	Colon
33	chr14:69122600-69129600	Weak transcription	Primary T helper cells PMA-I stimulated	--
34	chr14:69122800-69123600	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
35	chr14:69122800-69123600	Flanking Active TSS	HepG2	liver
36	chr14:69122800-69125000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
37	chr14:69122800-69125200	Enhancers	Stomach Smooth Muscle	stomach
38	chr14:69122800-69125200	Weak transcription	HSMMtube	muscle
39	chr14:69122800-69125600	Weak transcription	Brain Cingulate Gyrus	brain
40	chr14:69122800-69125600	Weak transcription	Left Ventricle	heart
41	chr14:69122800-69125600	Weak transcription	Stomach Mucosa	stomach
42	chr14:69122800-69125600	Weak transcription	HSMM	muscle
43	chr14:69122800-69128400	Weak transcription	Right Ventricle	heart
44	chr14:69122800-69133600	Weak transcription	Rectal Mucosa Donor 31	rectum
45	chr14:69122800-69133800	Weak transcription	Primary B cells from cord blood	blood
46	chr14:69123000-69124400	Weak transcription	Duodenum Smooth Muscle	Duodenum
47	chr14:69123000-69124600	Weak transcription	Lung	lung
48	chr14:69123000-69124800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
49	chr14:69123000-69124800	Weak transcription	Brain Germinal Matrix	brain
50	chr14:69123000-69125000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin

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