Variant report

Variant	rs4902624
Chromosome Location	chr14:69111114-69111115
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr14:69109174..69112186-chr14:69134021..69137562,3	MCF-7	breast:

Extended variants
information (count: 22 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs10131387	1.00[JPT][hapmap]
rs12895438	0.96[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs17106102	0.84[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[AMR][1000 genomes];0.97[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs1884811	1.00[JPT][hapmap]
rs2024944	0.84[CEU][hapmap];1.00[AFR][1000 genomes];0.92[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs2064825	0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[AMR][1000 genomes];0.94[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs2145155	1.00[CEU][hapmap];1.00[JPT][hapmap];0.88[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs4899247	1.00[AFR][1000 genomes];0.84[AMR][1000 genomes];0.90[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4902623	1.00[JPT][hapmap];0.85[ASN][1000 genomes]
rs4902625	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs6573846	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6573847	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];0.88[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6573848	0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6573849	0.85[CEU][hapmap];1.00[AFR][1000 genomes];0.92[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs7144613	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];0.88[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7148690	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7157140	1.00[JPT][hapmap];0.88[ASN][1000 genomes]
rs761951	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];0.88[AMR][1000 genomes];0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs8009034	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];0.88[AMR][1000 genomes];0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs8010030	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];0.88[AMR][1000 genomes];0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs8010921	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];0.88[AMR][1000 genomes];0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs8016840	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];0.88[AMR][1000 genomes];0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]

No data

Chromatin state (count:23 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:69105000-69121600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr14:69105600-69113000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
3	chr14:69105800-69113200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
4	chr14:69106000-69117000	Weak transcription	Fetal Intestine Large	intestine
5	chr14:69106200-69112800	Weak transcription	H9 Cell Line	embryonic stem cell
6	chr14:69106200-69115600	Weak transcription	Esophagus	oesophagus
7	chr14:69106400-69118200	Weak transcription	Placenta Amnion	Placenta Amnion
8	chr14:69106400-69118400	Weak transcription	Spleen	Spleen
9	chr14:69106600-69111800	Weak transcription	Rectal Smooth Muscle	rectum
10	chr14:69106800-69116000	Weak transcription	Ovary	ovary
11	chr14:69108800-69119000	Weak transcription	Duodenum Smooth Muscle	Duodenum
12	chr14:69109400-69122400	Weak transcription	Primary B cells from cord blood	blood
13	chr14:69109800-69111400	Enhancers	Fetal Stomach	stomach
14	chr14:69110400-69111200	Enhancers	Fetal Muscle Leg	muscle
15	chr14:69110600-69111200	Enhancers	Right Ventricle	heart
16	chr14:69110800-69111200	Enhancers	Fetal Muscle Trunk	muscle
17	chr14:69110800-69111400	Enhancers	Stomach Smooth Muscle	stomach
18	chr14:69111000-69111200	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
19	chr14:69111000-69111400	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
20	chr14:69111000-69111600	Enhancers	Fetal Heart	heart
21	chr14:69111000-69111800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
22	chr14:69111000-69112400	Enhancers	HSMMtube	muscle
23	chr14:69111000-69115400	Weak transcription	Adipose Nuclei	Adipose

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