Variant report

Variant	rs8010030
Chromosome Location	chr14:69085085-69085086
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr14:69083407..69085925-chr14:69094233..69096029,2	MCF-7	breast:
2	chr14:69083698..69085820-chr14:69090807..69092819,2	MCF-7	breast:
3	chr14:69072937..69074516-chr14:69083531..69085230,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000259038	Chromatin interaction

Extended variants
information (count: 22 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs10131387	1.00[JPT][hapmap]
rs12895438	0.83[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs17106102	0.84[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1884811	1.00[JPT][hapmap]
rs2024944	0.84[CEU][hapmap];1.00[AFR][1000 genomes];0.82[EUR][1000 genomes]
rs2064825	0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2145155	1.00[CEU][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4899247	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4902623	1.00[JPT][hapmap]
rs4902624	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];0.88[AMR][1000 genomes];0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4902625	0.88[AMR][1000 genomes];0.92[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs6573846	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6573847	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6573848	0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];0.88[AMR][1000 genomes];0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6573849	0.85[CEU][hapmap];1.00[AFR][1000 genomes];0.81[EUR][1000 genomes]
rs7144613	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7148690	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[AMR][1000 genomes];0.92[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs7157140	1.00[JPT][hapmap];0.94[ASN][1000 genomes]
rs761951	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8009034	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8010921	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8016840	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:69079200-69085400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
2	chr14:69082400-69085800	ZNF genes & repeats	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
3	chr14:69083200-69085400	ZNF genes & repeats	Monocytes-CD14+_RO01746	blood
4	chr14:69083800-69086200	Weak transcription	Fetal Heart	heart
5	chr14:69084000-69085800	ZNF genes & repeats	Fetal Muscle Leg	muscle
6	chr14:69084400-69085800	ZNF genes & repeats	Foreskin Melanocyte Primary Cells skin01	Skin
7	chr14:69084600-69085600	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
8	chr14:69084800-69088200	Weak transcription	Brain Inferior Temporal Lobe	brain
9	chr14:69084800-69088200	Weak transcription	Colon Smooth Muscle	Colon
10	chr14:69085000-69085200	ZNF genes & repeats	Primary T cells from cord blood	blood
11	chr14:69085000-69085200	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
12	chr14:69085000-69085400	Enhancers	Skeletal Muscle Female	skeletal muscle
13	chr14:69085000-69086600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
14	chr14:69085000-69087800	Enhancers	HepG2	liver

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links