Variant report

Variant	rs1884811
Chromosome Location	chr14:69121664-69121665
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr14:68937048..68939834-chr14:69120983..69124190,3	MCF-7	breast:
2	chr14:69120949..69124420-chr14:69255481..69258792,4	MCF-7	breast:
3	chr14:69095981..69098144-chr14:69121077..69123082,2	MCF-7	breast:
4	chr14:69111300..69112991-chr14:69119803..69122665,2	MCF-7	breast:
5	chr14:69119565..69122267-chr14:69260745..69262641,2	MCF-7	breast:
6	chr14:69115935..69118979-chr14:69121407..69123459,3	MCF-7	breast:

Variant related genes	Relation type
ENSG00000182185	Chromatin interaction
ENSG00000185650	Chromatin interaction

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs10131387	1.00[JPT][hapmap]
rs12436964	0.82[ASN][1000 genomes]
rs12893578	0.82[ASN][1000 genomes]
rs17106102	1.00[JPT][hapmap]
rs2064825	1.00[JPT][hapmap]
rs2145155	1.00[JPT][hapmap]
rs2180611	0.82[AMR][1000 genomes];0.91[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4902623	1.00[JPT][hapmap]
rs4902624	1.00[JPT][hapmap]
rs6573846	1.00[JPT][hapmap]
rs6573847	1.00[JPT][hapmap]
rs6573848	1.00[JPT][hapmap]
rs7144613	1.00[JPT][hapmap]
rs7148690	1.00[JPT][hapmap]
rs7157140	1.00[JPT][hapmap]
rs761951	1.00[JPT][hapmap]
rs8009034	1.00[JPT][hapmap]
rs8010030	1.00[JPT][hapmap]
rs8010921	1.00[JPT][hapmap]
rs8016840	1.00[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1798800	chr14:69114353-69131030	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:89 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:69109400-69122400	Weak transcription	Primary B cells from cord blood	blood
2	chr14:69115200-69123400	Enhancers	Colon Smooth Muscle	Colon
3	chr14:69115400-69130200	Enhancers	Fetal Stomach	stomach
4	chr14:69116000-69123600	Enhancers	Ovary	ovary
5	chr14:69116600-69121800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
6	chr14:69117000-69124000	Enhancers	Rectal Smooth Muscle	rectum
7	chr14:69117800-69122400	Weak transcription	Primary T helper cells PMA-I stimulated	--
8	chr14:69118400-69121800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
9	chr14:69118600-69121800	Weak transcription	Liver	Liver
10	chr14:69118800-69122000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
11	chr14:69119000-69122600	Weak transcription	A549	lung
12	chr14:69119000-69125800	Weak transcription	HUES6 Cell Line	embryonic stem cell
13	chr14:69119400-69121800	Weak transcription	Psoas Muscle	Psoas
14	chr14:69119600-69125400	Weak transcription	NHDF-Ad	bronchial
15	chr14:69120400-69123400	Enhancers	Spleen	Spleen
16	chr14:69120600-69121800	Flanking Active TSS	Stomach Smooth Muscle	stomach
17	chr14:69120600-69122600	Enhancers	Primary monocytes fromperipheralblood	blood
18	chr14:69120600-69122600	Enhancers	Monocytes-CD14+_RO01746	blood
19	chr14:69120600-69123000	Enhancers	Fetal Adrenal Gland	Adrenal Gland
20	chr14:69120600-69123600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
21	chr14:69120800-69121800	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
22	chr14:69120800-69122800	Enhancers	Brain Cingulate Gyrus	brain
23	chr14:69120800-69123000	Enhancers	Primary hematopoietic stem cells	blood
24	chr14:69120800-69123000	Enhancers	Fetal Heart	heart
25	chr14:69120800-69123600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
26	chr14:69120800-69123800	Enhancers	Breast Myoepithelial Primary Cells	Breast
27	chr14:69120800-69126800	Enhancers	Fetal Lung	lung
28	chr14:69120800-69127000	Enhancers	Fetal Thymus	thymus
29	chr14:69120800-69139800	Enhancers	Fetal Muscle Leg	muscle
30	chr14:69121000-69122200	Enhancers	Primary T killer naive cells fromperipheralblood	blood
31	chr14:69121000-69122800	Enhancers	Right Ventricle	heart
32	chr14:69121000-69123000	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
33	chr14:69121000-69123000	Enhancers	Pancreas	Pancrea
34	chr14:69121000-69123200	Enhancers	Primary T cells fromperipheralblood	blood
35	chr14:69121000-69123600	Enhancers	Fetal Intestine Small	intestine
36	chr14:69121000-69123600	Enhancers	Placenta	Placenta
37	chr14:69121000-69123800	Enhancers	Brain Substantia Nigra	brain
38	chr14:69121000-69125800	Enhancers	Fetal Muscle Trunk	muscle
39	chr14:69121200-69122000	Enhancers	Dnd41	blood
40	chr14:69121200-69122200	Enhancers	HepG2	liver
41	chr14:69121200-69122400	Weak transcription	Primary neutrophils fromperipheralblood	blood
42	chr14:69121200-69122400	Enhancers	NHLF	lung
43	chr14:69121200-69122600	Enhancers	Muscle Satellite Cultured Cells	--
44	chr14:69121200-69122800	Enhancers	Left Ventricle	heart
45	chr14:69121200-69122800	Enhancers	Right Atrium	heart
46	chr14:69121200-69122800	Enhancers	Stomach Mucosa	stomach
47	chr14:69121200-69122800	Enhancers	HSMM	muscle
48	chr14:69121200-69122800	Enhancers	HSMMtube	muscle
49	chr14:69121200-69123000	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
50	chr14:69121200-69123000	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links