Variant report

Variant	rs6573846
Chromosome Location	chr14:69092567-69092568
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr14:69083698..69085820-chr14:69090807..69092819,2	MCF-7	breast:
2	chr14:68706085..68708969-chr14:69092512..69094170,2	MCF-7	breast:
3	chr14:69091753..69104091-chr14:69256141..69263760,20	MCF-7	breast:
4	chr14:69090615..69103406-chr14:69249821..69264188,29	MCF-7	breast:
5	chr14:69086671..69090212-chr14:69090936..69094755,4	K562	blood:
6	chr14:69087589..69092834-chr14:69093343..69096451,7	MCF-7	breast:
7	chr14:69085914..69087953-chr14:69091172..69093355,2	K562	blood:

Variant related genes	Relation type
ENSG00000259038	Chromatin interaction
ENSG00000185650	Chromatin interaction

Extended variants
information (count: 25 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs10131387	1.00[JPT][hapmap]
rs12895438	0.87[TSI][hapmap];0.84[EUR][1000 genomes]
rs17106023	0.81[YRI][hapmap]
rs17106065	0.84[YRI][hapmap];0.88[AFR][1000 genomes]
rs17106102	0.84[CEU][hapmap];1.00[CHB][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.91[TSI][hapmap];0.89[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1884810	0.84[GIH][hapmap]
rs1884811	1.00[JPT][hapmap]
rs2024944	0.83[CEU][hapmap];0.82[EUR][1000 genomes]
rs2064825	0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2145155	1.00[CEU][hapmap];1.00[JPT][hapmap];0.84[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4899247	0.80[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4902623	1.00[CHD][hapmap];1.00[JPT][hapmap]
rs4902624	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4902625	0.92[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs6573847	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[AMR][1000 genomes];0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6573848	0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.91[TSI][hapmap];0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6573849	0.84[CEU][hapmap];0.81[EUR][1000 genomes]
rs7144613	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7148690	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs7157140	1.00[JPT][hapmap];0.94[ASN][1000 genomes]
rs761951	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.96[GIH][hapmap];1.00[JPT][hapmap];1.00[TSI][hapmap];0.84[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8009034	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.96[GIH][hapmap];1.00[JPT][hapmap];1.00[TSI][hapmap];0.84[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8010030	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8010921	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8016840	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

No data

Chromatin state (count:60 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:69085400-69095200	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
2	chr14:69086600-69098000	Enhancers	Placenta Amnion	Placenta Amnion
3	chr14:69087000-69098400	Weak transcription	NHLF	lung
4	chr14:69087200-69095000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
5	chr14:69087200-69095000	Weak transcription	Esophagus	oesophagus
6	chr14:69087400-69093800	Weak transcription	Primary B cells from cord blood	blood
7	chr14:69087400-69097000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
8	chr14:69087800-69092800	Weak transcription	HepG2	liver
9	chr14:69088000-69092800	Weak transcription	K562	blood
10	chr14:69088400-69093800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
11	chr14:69088400-69093800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
12	chr14:69088600-69092600	Weak transcription	Fetal Heart	heart
13	chr14:69088600-69093000	Weak transcription	Fetal Lung	lung
14	chr14:69088800-69092600	Weak transcription	Brain Hippocampus Middle	brain
15	chr14:69088800-69093000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
16	chr14:69088800-69093000	Weak transcription	Brain Anterior Caudate	brain
17	chr14:69088800-69093000	Weak transcription	Brain Cingulate Gyrus	brain
18	chr14:69088800-69093000	Weak transcription	Psoas Muscle	Psoas
19	chr14:69088800-69093200	Weak transcription	Aorta	Aorta
20	chr14:69088800-69093200	Weak transcription	Brain Inferior Temporal Lobe	brain
21	chr14:69088800-69093800	Weak transcription	Fetal Intestine Small	intestine
22	chr14:69088800-69093800	Weak transcription	Stomach Mucosa	stomach
23	chr14:69088800-69094000	Weak transcription	Rectal Mucosa Donor 29	rectum
24	chr14:69089000-69092800	Weak transcription	Brain Angular Gyrus	brain
25	chr14:69089000-69093000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
26	chr14:69089000-69093000	Weak transcription	Ovary	ovary
27	chr14:69089000-69094000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
28	chr14:69089000-69094000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
29	chr14:69089000-69094000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
30	chr14:69089000-69094000	Weak transcription	Fetal Intestine Large	intestine
31	chr14:69089200-69092800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
32	chr14:69089200-69092800	Weak transcription	NHDF-Ad	bronchial
33	chr14:69089400-69094200	Weak transcription	Duodenum Smooth Muscle	Duodenum
34	chr14:69090000-69094800	Enhancers	Placenta	Placenta
35	chr14:69090200-69092600	Weak transcription	Skeletal Muscle Male	skeletal muscle
36	chr14:69090200-69092600	Weak transcription	Skeletal Muscle Female	skeletal muscle
37	chr14:69090200-69092800	Weak transcription	Stomach Smooth Muscle	stomach
38	chr14:69090200-69093000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
39	chr14:69090200-69093000	Weak transcription	HSMMtube	muscle
40	chr14:69090200-69093200	Weak transcription	Rectal Smooth Muscle	rectum
41	chr14:69090200-69093800	Weak transcription	Primary B cells from peripheral blood	blood
42	chr14:69090400-69094200	Weak transcription	Fetal Muscle Trunk	muscle
43	chr14:69090400-69094800	Weak transcription	Colon Smooth Muscle	Colon
44	chr14:69090600-69093400	Weak transcription	Primary T cells from cord blood	blood
45	chr14:69091400-69092600	Weak transcription	Fetal Stomach	stomach
46	chr14:69091800-69093000	Weak transcription	Adipose Nuclei	Adipose
47	chr14:69091800-69094800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
48	chr14:69091800-69095200	Enhancers	Pancreas	Pancrea
49	chr14:69092000-69093800	Weak transcription	Fetal Thymus	thymus
50	chr14:69092000-69094200	Weak transcription	Primary hematopoietic stem cells	blood

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