Variant report

Variant	rs7148690
Chromosome Location	chr14:69115907-69115908
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr14:69096480..69098548-chr14:69114261..69117123,2	MCF-7	breast:
2	chr14:69113799..69116551-chr14:69119650..69121354,2	K562	blood:
3	chr14:69113122..69115915-chr14:69116555..69118938,2	K562	blood:

Extended variants
information (count: 23 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs10131387	1.00[JPT][hapmap]
rs12895438	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs17106102	0.84[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1884811	1.00[JPT][hapmap]
rs2024944	0.84[CEU][hapmap];0.92[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs2064825	0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[AMR][1000 genomes];0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2145155	1.00[CEU][hapmap];1.00[JPT][hapmap];0.88[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs4899247	0.84[AMR][1000 genomes];0.90[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs4902623	1.00[JPT][hapmap]
rs4902624	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs4902625	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6573846	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs6573847	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[AMR][1000 genomes];0.98[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs6573848	0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs6573849	0.85[CEU][hapmap];0.92[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs7144613	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[AMR][1000 genomes];0.96[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7157140	1.00[JPT][hapmap]
rs761951	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[AMR][1000 genomes];0.92[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs8009034	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[AMR][1000 genomes];0.92[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs8010030	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[AMR][1000 genomes];0.92[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs8010921	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[AMR][1000 genomes];0.92[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs8016840	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[AMR][1000 genomes];0.92[EUR][1000 genomes];0.82[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1798800	chr14:69114353-69131030	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:42 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:69105000-69121600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr14:69106000-69117000	Weak transcription	Fetal Intestine Large	intestine
3	chr14:69106400-69118200	Weak transcription	Placenta Amnion	Placenta Amnion
4	chr14:69106400-69118400	Weak transcription	Spleen	Spleen
5	chr14:69106800-69116000	Weak transcription	Ovary	ovary
6	chr14:69108800-69119000	Weak transcription	Duodenum Smooth Muscle	Duodenum
7	chr14:69109400-69122400	Weak transcription	Primary B cells from cord blood	blood
8	chr14:69111200-69116000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
9	chr14:69111200-69117200	Weak transcription	Right Ventricle	heart
10	chr14:69111200-69117800	Weak transcription	Fetal Muscle Trunk	muscle
11	chr14:69111400-69117200	Weak transcription	Stomach Smooth Muscle	stomach
12	chr14:69112000-69121600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
13	chr14:69112400-69118200	Weak transcription	NH-A	brain
14	chr14:69113000-69116800	Weak transcription	Fetal Heart	heart
15	chr14:69113200-69116000	Weak transcription	Muscle Satellite Cultured Cells	--
16	chr14:69113200-69121600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
17	chr14:69113400-69117000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
18	chr14:69113400-69117000	Weak transcription	Rectal Smooth Muscle	rectum
19	chr14:69113400-69117200	Weak transcription	Fetal Intestine Small	intestine
20	chr14:69113400-69118200	Weak transcription	HUES6 Cell Line	embryonic stem cell
21	chr14:69113400-69118200	Weak transcription	HepG2	liver
22	chr14:69113400-69118200	Weak transcription	HSMM	muscle
23	chr14:69113800-69118600	Weak transcription	HUES64 Cell Line	embryonic stem cell
24	chr14:69114000-69121200	Weak transcription	Primary B cells from peripheral blood	blood
25	chr14:69115200-69116000	Enhancers	Skeletal Muscle Female	skeletal muscle
26	chr14:69115200-69119600	Enhancers	Placenta	Placenta
27	chr14:69115200-69123400	Enhancers	Colon Smooth Muscle	Colon
28	chr14:69115400-69116600	Enhancers	Fetal Muscle Leg	muscle
29	chr14:69115400-69118000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
30	chr14:69115400-69119800	Enhancers	Fetal Lung	lung
31	chr14:69115400-69130200	Enhancers	Fetal Stomach	stomach
32	chr14:69115600-69116200	Enhancers	Psoas Muscle	Psoas
33	chr14:69115600-69116800	Enhancers	Esophagus	oesophagus
34	chr14:69115600-69117200	Enhancers	Osteobl	bone
35	chr14:69115600-69118400	Weak transcription	Cortex derived primary cultured neurospheres	brain
36	chr14:69115600-69118400	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
37	chr14:69115600-69119600	Enhancers	NHLF	lung
38	chr14:69115800-69117000	Weak transcription	Skeletal Muscle Male	skeletal muscle
39	chr14:69115800-69118200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
40	chr14:69115800-69118200	Weak transcription	Adipose Nuclei	Adipose
41	chr14:69115800-69120800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
42	chr14:69115800-69121600	Weak transcription	Small Intestine	intestine

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