Variant report

Variant	rs6573847
Chromosome Location	chr14:69104743-69104744
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr14:69099148..69101967-chr14:69103316..69106070,4	MCF-7	breast:
2	chr14:69104267..69107230-chr14:69123816..69125821,2	MCF-7	breast:

Extended variants
information (count: 22 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs10131387	1.00[JPT][hapmap]
rs12895438	0.83[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs17106102	0.84[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs1884811	1.00[JPT][hapmap]
rs2024944	0.84[CEU][hapmap];1.00[AFR][1000 genomes];0.88[EUR][1000 genomes]
rs2064825	0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs2145155	1.00[CEU][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs4899247	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4902623	1.00[JPT][hapmap];0.85[ASN][1000 genomes]
rs4902624	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];0.88[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4902625	0.88[AMR][1000 genomes];0.98[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs6573846	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[AMR][1000 genomes];0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6573848	0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];0.88[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6573849	0.85[CEU][hapmap];1.00[AFR][1000 genomes];0.86[EUR][1000 genomes]
rs7144613	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7148690	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[AMR][1000 genomes];0.98[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7157140	1.00[JPT][hapmap];0.88[ASN][1000 genomes]
rs761951	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs8009034	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs8010030	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs8010921	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs8016840	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]

No data

Chromatin state (count:107 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:69092200-69107000	Enhancers	Fetal Muscle Leg	muscle
2	chr14:69095600-69107400	Enhancers	Fetal Stomach	stomach
3	chr14:69095800-69107800	Weak transcription	Fetal Brain Female	brain
4	chr14:69096400-69105400	Weak transcription	H9 Cell Line	embryonic stem cell
5	chr14:69096400-69105400	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
6	chr14:69096800-69105000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
7	chr14:69098800-69105200	Weak transcription	Pancreas	Pancrea
8	chr14:69100800-69105400	Weak transcription	Primary hematopoietic stem cells short term culture	blood
9	chr14:69100800-69105400	Weak transcription	Sigmoid Colon	Sigmoid Colon
10	chr14:69100800-69107000	Weak transcription	Small Intestine	intestine
11	chr14:69100800-69107800	Weak transcription	Primary B cells from cord blood	blood
12	chr14:69101000-69104800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
13	chr14:69101000-69105000	Weak transcription	Primary B cells from peripheral blood	blood
14	chr14:69101000-69105200	Weak transcription	Primary hematopoietic stem cells	blood
15	chr14:69101000-69105200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
16	chr14:69101200-69104800	Weak transcription	Fetal Brain Male	brain
17	chr14:69101200-69105200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
18	chr14:69101200-69105400	Weak transcription	Colonic Mucosa	Colon
19	chr14:69101200-69106400	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
20	chr14:69101200-69106400	Enhancers	Brain Anterior Caudate	brain
21	chr14:69102200-69106200	Enhancers	Brain Substantia Nigra	brain
22	chr14:69102600-69105000	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
23	chr14:69102600-69106400	Enhancers	Brain Hippocampus Middle	brain
24	chr14:69102600-69106600	Enhancers	Colon Smooth Muscle	Colon
25	chr14:69102800-69105200	Enhancers	HepG2	liver
26	chr14:69102800-69106200	Enhancers	Fetal Intestine Small	intestine
27	chr14:69102800-69106400	Enhancers	Fetal Kidney	kidney
28	chr14:69102800-69106400	Enhancers	Placenta Amnion	Placenta Amnion
29	chr14:69102800-69106600	Enhancers	Fetal Thymus	thymus
30	chr14:69103000-69106400	Enhancers	Brain Inferior Temporal Lobe	brain
31	chr14:69103200-69104800	Enhancers	Rectal Smooth Muscle	rectum
32	chr14:69103200-69104800	Enhancers	Stomach Smooth Muscle	stomach
33	chr14:69103200-69106200	Enhancers	Brain Angular Gyrus	brain
34	chr14:69103400-69105000	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
35	chr14:69103400-69106000	Enhancers	Fetal Intestine Large	intestine
36	chr14:69103400-69106200	Enhancers	Primary T cells from cord blood	blood
37	chr14:69103400-69106200	Enhancers	Brain Cingulate Gyrus	brain
38	chr14:69103400-69106200	Enhancers	Lung	lung
39	chr14:69103400-69106400	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
40	chr14:69103400-69106400	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
41	chr14:69103400-69106600	Enhancers	Placenta	Placenta
42	chr14:69103400-69106800	Enhancers	Fetal Muscle Trunk	muscle
43	chr14:69103600-69105000	Weak transcription	K562	blood
44	chr14:69103600-69105600	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
45	chr14:69103600-69106400	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
46	chr14:69103600-69106400	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
47	chr14:69103800-69105600	Weak transcription	Primary neutrophils fromperipheralblood	blood
48	chr14:69103800-69106400	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
49	chr14:69103800-69106400	Enhancers	Primary T cells fromperipheralblood	blood
50	chr14:69103800-69106400	Enhancers	Right Atrium	heart

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