Variant report

Variant	rs10137975
Chromosome Location	chr14:78650561-78650562
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs10130602	0.94[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs10130825	0.92[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs10132342	0.87[EUR][1000 genomes]
rs10137891	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12879382	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1569326	0.92[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs213560	0.86[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs213561	0.83[AFR][1000 genomes];0.92[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs213564	0.91[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs213568	0.88[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs2365676	0.88[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs4899703	0.88[EUR][1000 genomes]
rs4903723	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs8010140	0.88[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs862329	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs971639	0.88[AMR][1000 genomes];0.87[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1366	chr14:78633044-78677718	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
2	nsv1038627	chr14:78635498-78657912	Active TSS Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:78648000-78659000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr14:78648400-78651200	Weak transcription	Fetal Brain Male	brain
3	chr14:78649000-78652600	Enhancers	Brain Germinal Matrix	brain

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links