Variant report

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs10130602	0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10132342	0.87[EUR][1000 genomes]
rs10137891	0.92[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs10137975	0.92[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs10483896	0.85[CEU][hapmap]
rs12879382	0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1569326	0.97[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs213560	0.94[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs213561	0.88[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs213564	0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs213568	1.00[CEU][hapmap];1.00[CHB][hapmap];0.89[JPT][hapmap];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs213573	0.82[AMR][1000 genomes]
rs2365676	0.91[AFR][1000 genomes];0.95[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs4899703	0.88[EUR][1000 genomes]
rs4903717	0.81[AMR][1000 genomes]
rs4903723	0.86[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs8003110	0.85[CEU][hapmap]
rs8010140	0.86[AFR][1000 genomes];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs862329	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs971639	0.88[AFR][1000 genomes];0.95[AMR][1000 genomes];0.87[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1366	chr14:78633044-78677718	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
2	nsv1038627	chr14:78635498-78657912	Active TSS Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:78648000-78659000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr14:78652600-78660200	Weak transcription	Brain Germinal Matrix	brain
3	chr14:78654600-78655800	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain

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