Variant report

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs10130602	0.95[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10130825	0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10132342	0.85[EUR][1000 genomes]
rs10137891	0.91[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs10137975	0.91[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs10483896	0.85[CEU][hapmap]
rs12879382	0.91[AFR][1000 genomes];0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12880388	0.85[CEU][hapmap]
rs1569326	0.89[AFR][1000 genomes];0.95[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs213560	0.92[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs213561	0.89[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs213568	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.99[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs213573	0.80[AMR][1000 genomes]
rs2365676	0.93[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs4899703	0.87[EUR][1000 genomes]
rs4903723	0.85[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs7149373	0.85[CEU][hapmap]
rs8003110	0.85[CEU][hapmap]
rs8010140	0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs862329	0.89[AMR][1000 genomes];0.99[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs971639	0.93[AMR][1000 genomes];0.86[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1366	chr14:78633044-78677718	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
2	nsv1038627	chr14:78635498-78657912	Active TSS Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:78639600-78644600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
2	chr14:78640200-78642200	Flanking Active TSS	Brain Germinal Matrix	brain
3	chr14:78640800-78644400	Weak transcription	Brain Anterior Caudate	brain
4	chr14:78641000-78647800	Weak transcription	Fetal Brain Male	brain
5	chr14:78641200-78644400	Weak transcription	Brain Angular Gyrus	brain
6	chr14:78641400-78644600	Weak transcription	Brain Inferior Temporal Lobe	brain

Quick Search: