Variant report

Variant	rs213560
Chromosome Location	chr14:78637991-78637992
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs10130602	0.92[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs10130825	0.94[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs10137891	0.86[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs10137975	0.86[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs12879382	0.89[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs1569326	0.94[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs213561	0.91[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs213564	0.92[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs213568	0.89[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs213570	0.82[AMR][1000 genomes]
rs213573	0.85[AMR][1000 genomes]
rs2365676	0.89[AMR][1000 genomes]
rs4903717	0.84[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs4903723	0.81[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs8010140	0.89[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs862329	0.85[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs971639	0.89[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1366	chr14:78633044-78677718	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
2	nsv1038627	chr14:78635498-78657912	Active TSS Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:24 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:78636200-78641800	Active TSS	Fetal Brain Female	brain
2	chr14:78636400-78641400	Active TSS	Brain Inferior Temporal Lobe	brain
3	chr14:78636600-78639600	Active TSS	Brain Dorsolateral Prefrontal Cortex	brain
4	chr14:78636800-78638600	Active TSS	Brain Hippocampus Middle	brain
5	chr14:78636800-78640200	Weak transcription	Lung	lung
6	chr14:78636800-78640800	Active TSS	Brain Anterior Caudate	brain
7	chr14:78637000-78639600	Active TSS	Brain Angular Gyrus	brain
8	chr14:78637000-78639800	Active TSS	Brain Cingulate Gyrus	brain
9	chr14:78637000-78640800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
10	chr14:78637000-78641000	Active TSS	Fetal Brain Male	brain
11	chr14:78637200-78638000	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
12	chr14:78637200-78638000	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
13	chr14:78637200-78638000	Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
14	chr14:78637200-78638800	Enhancers	ES-I3 Cell Line	embryonic stem cell
15	chr14:78637200-78639000	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
16	chr14:78637200-78640200	Active TSS	Brain Germinal Matrix	brain
17	chr14:78637600-78638200	Flanking Active TSS	Ganglion Eminence derived primary cultured neurospheres	brain
18	chr14:78637600-78638800	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
19	chr14:78637800-78638000	Active TSS	H1 Cell Line	embryonic stem cell
20	chr14:78637800-78638000	Active TSS	iPS-20b Cell Line	embryonic stem cell
21	chr14:78637800-78638000	Flanking Bivalent TSS/Enh	Cortex derived primary cultured neurospheres	brain
22	chr14:78637800-78638000	Enhancers	Colonic Mucosa	Colon
23	chr14:78637800-78638200	Enhancers	iPS-18 Cell Line	embryonic stem cell
24	chr14:78637800-78639000	Enhancers	HUES48 Cell Line	embryonic stem cell

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