Variant report

Variant	rs1569326
Chromosome Location	chr14:78652196-78652197
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 18 )
Associated
traits (count: 3 )

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs10130602	0.91[AFR][1000 genomes];0.98[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs10130825	0.97[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs10137891	0.92[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs10137975	0.92[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs12879382	0.87[AFR][1000 genomes];0.95[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs12880388	0.85[CEU][hapmap]
rs213560	0.94[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs213561	0.85[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs213564	0.89[AFR][1000 genomes];0.95[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs213568	0.93[CEU][hapmap];0.88[JPT][hapmap];1.00[YRI][hapmap];0.90[AFR][1000 genomes];0.92[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs2365676	0.92[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs4899703	0.81[EUR][1000 genomes]
rs4903723	0.86[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs8010140	0.92[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs862329	0.91[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs971639	0.92[AMR][1000 genomes];0.80[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1366	chr14:78633044-78677718	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
2	nsv1038627	chr14:78635498-78657912	Active TSS Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

mRNA abundance (count:3)

SNP	Gene	Cis/trans	Tissue	Source
rs1569326	TSHR	cis	parietal	SCAN
rs1569326	C14orf179	cis	cerebellum	SCAN
rs1569326	ADCK1	cis	cerebellum	SCAN

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:78648000-78659000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr14:78649000-78652600	Enhancers	Brain Germinal Matrix	brain
3	chr14:78651600-78654600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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