Variant report

Variant	rs8010140
Chromosome Location	chr14:78661328-78661329
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs10130602	0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs10130825	0.86[AFR][1000 genomes];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs10132342	0.83[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs10137891	0.88[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs10137975	0.88[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs12879382	0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1569326	0.92[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs213560	0.89[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs213561	0.84[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs213564	0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs213568	0.85[CHB][hapmap];0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs213573	0.80[AMR][1000 genomes]
rs2365676	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs4899703	0.83[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs4903717	0.82[AMR][1000 genomes]
rs4903723	0.85[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs862329	0.86[AMR][1000 genomes];0.97[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs971639	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];0.90[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1366	chr14:78633044-78677718	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:78659200-78666000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr14:78659600-78664200	Weak transcription	Brain Inferior Temporal Lobe	brain
3	chr14:78660200-78663000	Enhancers	Brain Germinal Matrix	brain
4	chr14:78660600-78661600	Enhancers	Fetal Thymus	thymus
5	chr14:78661000-78666000	Weak transcription	Thymus	Thymus

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links