Variant report

Variant	rs213561
Chromosome Location	chr14:78639213-78639214
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs10130602	0.86[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs10130825	0.88[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs10132342	0.83[EUR][1000 genomes]
rs10137891	0.83[AFR][1000 genomes];0.92[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs10137975	0.83[AFR][1000 genomes];0.92[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs10483896	0.85[CEU][hapmap]
rs12879382	0.84[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs1569326	0.85[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs213560	0.91[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs213564	0.89[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs213568	1.00[CEU][hapmap];0.88[JPT][hapmap];0.86[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs2365676	0.84[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs4899703	0.84[EUR][1000 genomes]
rs4903723	0.86[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs8003110	0.85[CEU][hapmap]
rs8010140	0.84[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs862329	0.91[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs971639	0.84[AMR][1000 genomes];0.83[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1366	chr14:78633044-78677718	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
2	nsv1038627	chr14:78635498-78657912	Active TSS Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
3	nsv514752	chr14:78638503-78640247	Bivalent/Poised TSS Enhancers Active TSS Weak transcription Flanking Active TSS	n/a	n/a	inside rSNPs	n/a

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:78636200-78641800	Active TSS	Fetal Brain Female	brain
2	chr14:78636400-78641400	Active TSS	Brain Inferior Temporal Lobe	brain
3	chr14:78636600-78639600	Active TSS	Brain Dorsolateral Prefrontal Cortex	brain
4	chr14:78636800-78640200	Weak transcription	Lung	lung
5	chr14:78636800-78640800	Active TSS	Brain Anterior Caudate	brain
6	chr14:78637000-78639600	Active TSS	Brain Angular Gyrus	brain
7	chr14:78637000-78639800	Active TSS	Brain Cingulate Gyrus	brain
8	chr14:78637000-78640800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
9	chr14:78637000-78641000	Active TSS	Fetal Brain Male	brain
10	chr14:78637200-78640200	Active TSS	Brain Germinal Matrix	brain
11	chr14:78638200-78641200	Active TSS	Ganglion Eminence derived primary cultured neurospheres	brain
12	chr14:78638600-78640200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
13	chr14:78638800-78640000	Active TSS	Cortex derived primary cultured neurospheres	brain

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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