Variant report

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs10130602	0.93[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs10130825	0.91[AFR][1000 genomes];0.95[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs10132342	0.83[AMR][1000 genomes];0.92[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10137891	0.88[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs10137975	0.88[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs10483896	0.85[CEU][hapmap];1.00[CHB][hapmap]
rs12879382	0.97[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs12880388	0.85[CEU][hapmap];1.00[CHB][hapmap]
rs1569326	0.92[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs213560	0.89[AMR][1000 genomes]
rs213561	0.84[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs213564	0.93[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs213568	1.00[CEU][hapmap];0.97[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs213573	0.80[AMR][1000 genomes]
rs2205161	1.00[CHB][hapmap]
rs4899703	0.83[AMR][1000 genomes];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4903717	0.82[AMR][1000 genomes]
rs4903723	0.85[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs7145595	1.00[CHB][hapmap]
rs7149373	0.85[CEU][hapmap];1.00[CHB][hapmap]
rs8003110	0.85[CEU][hapmap];1.00[CHB][hapmap]
rs8009291	1.00[CHB][hapmap]
rs8010140	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs862329	0.86[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs971639	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1366	chr14:78633044-78677718	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs2365676	TSHR	cis	parietal	SCAN

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:78659200-78666000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr14:78659600-78664200	Weak transcription	Brain Inferior Temporal Lobe	brain
3	chr14:78661000-78666000	Weak transcription	Thymus	Thymus
4	chr14:78661400-78664800	Weak transcription	Pancreatic Islets	Pancreatic Islet
5	chr14:78661600-78665400	Weak transcription	Fetal Thymus	thymus
6	chr14:78662800-78664000	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
7	chr14:78662800-78667800	Weak transcription	Brain Angular Gyrus	brain
8	chr14:78663600-78664800	Enhancers	Brain Germinal Matrix	brain

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