Variant report

Variant	rs10208055
Chromosome Location	chr2:178237067-178237068
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 94 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:93)

rs_ID	r²[population]
rs10172305	0.90[EUR][1000 genomes]
rs10176724	0.88[EUR][1000 genomes]
rs10184488	0.82[EUR][1000 genomes]
rs10190306	0.82[EUR][1000 genomes]
rs10194452	0.84[EUR][1000 genomes]
rs10497505	0.82[EUR][1000 genomes]
rs10497506	0.82[EUR][1000 genomes]
rs10754987	0.84[EUR][1000 genomes]
rs10754988	0.84[EUR][1000 genomes]
rs10803911	0.82[EUR][1000 genomes]
rs10930788	0.84[EUR][1000 genomes]
rs10930789	0.87[EUR][1000 genomes]
rs10930790	0.84[EUR][1000 genomes]
rs10930791	0.82[EUR][1000 genomes]
rs10930793	0.82[EUR][1000 genomes]
rs11891003	0.84[EUR][1000 genomes]
rs12468046	0.84[EUR][1000 genomes]
rs12478545	0.82[EUR][1000 genomes]
rs12612957	0.84[EUR][1000 genomes]
rs12621156	0.84[EUR][1000 genomes]
rs12693121	0.84[EUR][1000 genomes]
rs12997516	0.84[EUR][1000 genomes]
rs13007779	0.84[EUR][1000 genomes]
rs1349762	0.89[EUR][1000 genomes]
rs1446837	0.81[EUR][1000 genomes]
rs1446838	0.82[EUR][1000 genomes]
rs1453369	0.84[EUR][1000 genomes]
rs1530965	0.81[EUR][1000 genomes]
rs1545363	0.84[EUR][1000 genomes]
rs1584806	0.82[EUR][1000 genomes]
rs17326999	0.83[EUR][1000 genomes]
rs17398864	0.84[EUR][1000 genomes]
rs1901823	0.84[EUR][1000 genomes]
rs1979059	0.84[EUR][1000 genomes]
rs2044493	0.84[EUR][1000 genomes]
rs2084966	0.87[EUR][1000 genomes]
rs2084967	0.84[EUR][1000 genomes]
rs2100395	0.83[EUR][1000 genomes]
rs2123643	0.87[EUR][1000 genomes]
rs2166556	0.84[EUR][1000 genomes]
rs2166557	0.82[EUR][1000 genomes]
rs2167902	0.82[EUR][1000 genomes]
rs2364846	0.88[EUR][1000 genomes]
rs2364849	0.87[EUR][1000 genomes]
rs2364850	0.82[EUR][1000 genomes]
rs2364851	0.82[EUR][1000 genomes]
rs2364852	0.82[EUR][1000 genomes]
rs3754989	0.82[EUR][1000 genomes]
rs3813260	0.87[EUR][1000 genomes]
rs3952496	0.89[EUR][1000 genomes]
rs4308151	0.82[EUR][1000 genomes]
rs4335983	0.82[EUR][1000 genomes]
rs4350784	0.83[EUR][1000 genomes]
rs4402804	0.83[EUR][1000 genomes]
rs4585065	0.82[EUR][1000 genomes]
rs4893826	0.84[EUR][1000 genomes]
rs4893827	0.84[EUR][1000 genomes]
rs4893933	0.88[EUR][1000 genomes]
rs4893940	0.83[EUR][1000 genomes]
rs4893942	0.84[EUR][1000 genomes]
rs4893943	0.87[EUR][1000 genomes]
rs4893955	0.82[EUR][1000 genomes]
rs57890299	0.83[EUR][1000 genomes]
rs6433664	0.84[EUR][1000 genomes]
rs6433666	0.82[EUR][1000 genomes]
rs6433674	0.83[EUR][1000 genomes]
rs6433675	0.84[EUR][1000 genomes]
rs6433676	0.84[EUR][1000 genomes]
rs6433677	0.82[EUR][1000 genomes]
rs6715365	0.84[EUR][1000 genomes]
rs6717457	0.86[EUR][1000 genomes]
rs6719114	0.84[EUR][1000 genomes]
rs6720483	0.87[EUR][1000 genomes]
rs6721168	0.81[AFR][1000 genomes];0.90[EUR][1000 genomes]
rs6725096	0.82[EUR][1000 genomes]
rs6732250	0.82[EUR][1000 genomes]
rs6739792	0.87[EUR][1000 genomes]
rs6741974	0.85[EUR][1000 genomes]
rs6744488	0.82[EUR][1000 genomes]
rs6754660	0.83[EUR][1000 genomes]
rs7568452	0.82[EUR][1000 genomes]
rs7570297	0.84[EUR][1000 genomes]
rs7585952	0.84[EUR][1000 genomes]
rs7589927	0.84[EUR][1000 genomes]
rs7594073	0.87[EUR][1000 genomes]
rs7601132	0.81[EUR][1000 genomes]
rs7604299	0.84[EUR][1000 genomes]
rs7604668	0.82[EUR][1000 genomes]
rs7608135	0.84[EUR][1000 genomes]
rs9288001	0.85[EUR][1000 genomes]
rs9789580	0.84[EUR][1000 genomes]
rs9917193	0.87[EUR][1000 genomes]
rs9917333	0.87[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv3051	chr2:178193436-178239394	Enhancers Weak transcription Active TSS Strong transcription Flanking Active TSS ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs10208055	AGPS	Cis_1M	lymphoblastoid	RTeQTL

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:178203400-178244400	Weak transcription	HSMM	muscle
2	chr2:178218000-178256200	Weak transcription	HepG2	liver
3	chr2:178221600-178240600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
4	chr2:178232800-178244400	Weak transcription	Dnd41	blood
5	chr2:178235400-178256600	Weak transcription	Primary T cells from cord blood	blood
6	chr2:178235800-178244600	Weak transcription	Monocytes-CD14+_RO01746	blood

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links