The 2.0 version of rSNPBase

Variant report

Variant rs11891003
Chromosome Location chr2:178332656-178332657
allele A/G
Outlinks Ensembl   UCSC
Chromatin state (count:112 , 50 per page) page: 1 2 3
No. Chromosome Location Chromatin state Cell line Tissue
1 chr2:178296400-178397000 Weak transcription Primary T helper naive cells from peripheral blood blood
2 chr2:178298800-178336800 Weak transcription Primary T helper memory cells from peripheral blood 1 blood
3 chr2:178298800-178357800 Weak transcription Primary T killer naive cells fromperipheralblood blood
4 chr2:178299400-178357800 Weak transcription Primary T killer memory cells from peripheral blood blood
5 chr2:178301600-178339800 Weak transcription Small Intestine intestine
6 chr2:178301800-178339200 Weak transcription Hela-S3 cervix
7 chr2:178304400-178338800 Weak transcription HMEC breast
8 chr2:178316000-178333200 Weak transcription Pancreatic Islets Pancreatic Islet
9 chr2:178316200-178345600 Weak transcription Fetal Brain Male brain
10 chr2:178320000-178336200 Weak transcription Colon Smooth Muscle Colon
11 chr2:178325000-178335800 Strong transcription HepG2 liver
12 chr2:178330200-178335000 Strong transcription Primary Natural Killer cells fromperipheralblood blood
13 chr2:178330600-178332800 Weak transcription Right Atrium heart
14 chr2:178330800-178356800 Weak transcription Primary T cells effector/memory enriched fromperipheralblood blood
15 chr2:178331000-178333200 Strong transcription Liver Liver
16 chr2:178331000-178333200 Enhancers HUVEC blood vessel
17 chr2:178331000-178333800 Weak transcription iPS-20b Cell Line embryonic stem cell
18 chr2:178331000-178334600 Weak transcription Fetal Kidney kidney
19 chr2:178331000-178334800 Weak transcription iPS-18 Cell Line embryonic stem cell
20 chr2:178331000-178354600 Weak transcription Rectal Smooth Muscle rectum
21 chr2:178331000-178357800 Weak transcription HUES6 Cell Line embryonic stem cell
22 chr2:178331000-178357800 Weak transcription Stomach Smooth Muscle stomach
23 chr2:178331000-178361600 Weak transcription Brain Substantia Nigra brain
24 chr2:178331000-178378600 Weak transcription Skeletal Muscle Female skeletal muscle
25 chr2:178331200-178333000 Enhancers HSMM muscle
26 chr2:178331200-178334600 Strong transcription Primary hematopoietic stem cells G-CSF-mobilized Male --
27 chr2:178331200-178334600 Weak transcription K562 blood
28 chr2:178331200-178334800 Weak transcription Fetal Lung lung
29 chr2:178331200-178334800 Weak transcription GM12878-XiMat blood
30 chr2:178331200-178337200 Weak transcription Duodenum Smooth Muscle Duodenum
31 chr2:178331200-178349000 Weak transcription Left Ventricle heart
32 chr2:178331200-178355000 Weak transcription Brain Inferior Temporal Lobe brain
33 chr2:178331200-178358000 Weak transcription Brain Angular Gyrus brain
34 chr2:178331200-178378600 Weak transcription Placenta Placenta
35 chr2:178331200-178379200 Weak transcription Primary T helper 17 cells PMA-I stimulated --
36 chr2:178331400-178333000 Enhancers HSMMtube muscle
37 chr2:178331400-178333000 Enhancers NH-A brain
38 chr2:178331400-178333600 Weak transcription Primary T cells from cord blood blood
39 chr2:178331400-178333800 Weak transcription Monocytes-CD14+_RO01746 blood
40 chr2:178331400-178334600 Weak transcription Primary hematopoietic stem cells G-CSF-mobilized Female --
41 chr2:178331400-178334600 Weak transcription Duodenum Mucosa Duodenum
42 chr2:178331400-178334800 Weak transcription Thymus Thymus
43 chr2:178331400-178335200 Weak transcription ES-I3 Cell Line embryonic stem cell
44 chr2:178331400-178336600 Weak transcription Ganglion Eminence derived primary cultured neurospheres brain
45 chr2:178331400-178336800 Weak transcription HUES48 Cell Line embryonic stem cell
46 chr2:178331400-178339000 Weak transcription Ovary ovary
47 chr2:178331400-178339000 Weak transcription Sigmoid Colon Sigmoid Colon
48 chr2:178331400-178339400 Weak transcription Primary T helper memory cells from peripheral blood 2 blood
49 chr2:178331400-178343600 Weak transcription Fetal Brain Female brain
50 chr2:178331400-178348000 Weak transcription Rectal Mucosa Donor 29 rectum

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Last update: Aug 31, 2015